Locus 5647

Sequence ID X_DroMel_CAF1
Location 14,590,926 – 14,591,031
Length 105
Max. P 0.748810
window9173

overview

Window 3

Location 14,590,926 – 14,591,031
Length 105
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 78.03
Mean single sequence MFE -29.44
Consensus MFE -16.60
Energy contribution -17.02
Covariance contribution 0.42
Combinations/Pair 1.21
Mean z-score -1.84
Structure conservation index 0.56
SVM decision value 0.47
SVM RNA-class probability 0.748810
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14590926 105 + 22224390
GGCAGAUACAAAACG-CAUCCGUUUUGUGCAAUGUAAUCGACAAUUAUCAGCGACAUGAGCAAACCAAUUGUUCAGUGCCGCGU-GUC-----CGCAGUCAGAUAUCCUUCG
.(((..(((((((((-....)))))))))...))).((((((........(((...(((((((.....))))))).))).(((.-...-----))).))).)))........ ( -27.20)
>DroPse_CAF1 77676 105 + 1
-------ACAGAACGGUAUCCGUUUUGUGCAACGCAAACGACAAUUAUCAGCGACAUGAGCAAACCAAUUGUUCAGUGCCCCCUUGUCGAGGGGGUACUCCAUUCUCCAUUC
-------(((((((((...)))))))))....(((...............)))...(((((((.....)))))))((((((((((...)))))))))).............. ( -34.86)
>DroEre_CAF1 62029 105 + 1
GGCAGAUACAAAACG-CAUCCGUUUUGUGCAAUGCAAUCGACAAUUAUCAGCGACAUGAGCGAACCAAUUGUUCAGCGCCGCGU-GUC-----CGCAGUCAGAUAUCCUUCG
.(((..(((((((((-....)))))))))...))).((((((........(((...(((((((.....))))))).))).(((.-...-----))).))).)))........ ( -30.60)
>DroYak_CAF1 62869 105 + 1
GGCAGAUACAAAACG-CAUCCGUUUUGUGCGCUAUAAUCGACAAUUAUCAGCGACAUGAGCAAACCAAUUGUUCAGUGCCGCGU-GUC-----CGCAGUCAGAUAUCCUUCG
((((..(((((((((-....)))))))))(((((((((.....))))).))))...(((((((.....))))))).))))(((.-...-----)))................ ( -28.80)
>DroAna_CAF1 101030 99 + 1
GACA---ACAAAACA-CAUCCGUUUCGUGAAACGCAAUCGACAAUUAUUUGCGACAUGAGCAAACCAAUUGUUCCGCGCCCCCU--UC-----CAGUGUCCAGUGUCCUG--
((((---.....(((-(....((((....))))((....(((((((.(((((.......)))))..)))))))..)).......--..-----..))))....))))...-- ( -20.30)
>DroPer_CAF1 77186 105 + 1
-------ACAGAACGGUAUCCGUUUUGUGCAACGCAUACGACAAUUAUCAGCGACAUGAGCAAACCAAUUGUUCAGUGCCCCCUUGUCGAGGGGGUACUCCAUUCUCCAUUC
-------(((((((((...)))))))))....(((...............)))...(((((((.....)))))))((((((((((...)))))))))).............. ( -34.86)
>consensus
GGCA___ACAAAACG_CAUCCGUUUUGUGCAACGCAAUCGACAAUUAUCAGCGACAUGAGCAAACCAAUUGUUCAGUGCCCCCU_GUC_____CGCAGUCAAAUAUCCUUCG
.......((((((((.....))))))))...........(((........(((...(((((((.....))))))).))).(((..........))).)))............ (-16.60 = -17.02 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:07 2006