Locus 5646

Sequence ID X_DroMel_CAF1
Location 14,586,428 – 14,586,537
Length 109
Max. P 0.721299
window9172

overview

Window 2

Location 14,586,428 – 14,586,537
Length 109
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.74
Mean single sequence MFE -17.43
Consensus MFE -10.06
Energy contribution -10.06
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.60
Structure conservation index 0.58
SVM decision value 0.40
SVM RNA-class probability 0.721299
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14586428 109 - 22224390
CUUUAUGCUUCGUUAAAAAUGAUGUACAAAUCAAAUGCCAGAAGCAAUUUCCCAGCAACAAUUACAGC-AAAAACACCAGC--AGCCAGAGAAGCUACGGCAAACCACAA--CA------
((((.((((((........((((......)))).......))))))........((..........))-............--....))))..((....)).........--..------ ( -15.36)
>DroPse_CAF1 71297 106 - 1
CAGUAUGCUUCGUUAAAAAUGAUGUACAAAUCAAAUGCCAGAAGCAAUUUCCCC-----CAAUACA----AAAACAAGAACAGGGCCA-----GCUCUGACCAAAGACAGGACAUGGCAA
.....((((((........((((......)))).......))))))........-----.......----..............((((-----(..(((........)))..).)))).. ( -20.06)
>DroSec_CAF1 61539 109 - 1
CUUUAUGCUUCGUUAAAAAUGAUGUACAAAUCAAAUGCCAGAAGCAAUUUCCCAGCAACAAUUACAGC-CAAAACACCAGC--AGCCAGAGAAGCUCCGGCAAACCAAAA--CA------
.....((((((........((((......)))).......))))))......................-............--.(((.(((...))).))).........--..------ ( -17.06)
>DroEre_CAF1 57904 109 - 1
CUUUAUGCUUCGUUAAAAAUGAUGUACAAAUCAAAUGCCAGAAGCAAUUUCCCAGCAACAAUUACAGC-CAAAACACCAGC--AGCCAGAGAAGCUCCGGCAAACCACAA--AA------
.....((((((........((((......)))).......))))))......................-............--.(((.(((...))).))).........--..------ ( -17.06)
>DroAna_CAF1 94802 98 - 1
CUUUAUGCUUCGUUAAAAAUGAUGUACAAAUCAAAUGCCAGAAGCAAUUUCCCAA-AACAACUACACCACCAAACA----A--AGCCAGACAAA-------AAGCUGCAA--CA------
.....((((((........((((......)))).......)))))).........-....................----.--.((.((.....-------...))))..--..------ ( -11.46)
>DroPer_CAF1 70845 106 - 1
CAGUAUGCUUCGUUAAAAAUGAUGUACAAAUCAAAUGCCAGAAGCAAUUUCCCC-----CAAUACA----AAAACAAGAACAGGGCCA-----GUUCUGACCAAAGACAGGACAUGGCAA
.....((((((........((((......)))).......))))))........-----.......----..............((((-----((((((........)))))).)))).. ( -23.56)
>consensus
CUUUAUGCUUCGUUAAAAAUGAUGUACAAAUCAAAUGCCAGAAGCAAUUUCCCAG_AACAAUUACAGC_CAAAACACCAGC__AGCCAGAGAAGCUCCGGCAAACCACAA__CA______
.....((((((........((((......)))).......)))))).......................................................................... (-10.06 = -10.06 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:06 2006