Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,578,543 – 14,578,641 |
Length | 98 |
Max. P | 0.837530 |
Location | 14,578,543 – 14,578,641 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 81.67 |
Mean single sequence MFE | -16.72 |
Consensus MFE | -11.58 |
Energy contribution | -11.58 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.98 |
Structure conservation index | 0.69 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.837530 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14578543 98 - 22224390 CACACCGCUCCUCUGCGCCACUCACAAUCUCCUCCAGCUGACCACUUGGCUACUGGAG--AAUCAGUCGGCUCCAAAUAUUCACAAAGAUUUACGAACAC ......((......))((((((.....(((((...(((..(....)..)))...))))--)...))).)))............................. ( -19.90) >DroSec_CAF1 53958 83 - 1 CCCACU---------------CCACAAUCUCCUCCAGCUGACCACUUGGCUACUGGAG--AAUCAGUCGGCUCCAAAUAUCCACAAAGAUUUACGAACAC .....(---------------(...(((((.((((((..(.((....)))..))))))--.....((.((..........))))..)))))...)).... ( -13.80) >DroSim_CAF1 54000 83 - 1 CCCACU---------------CCACAAUCUCCUCCAGCUGACCACUUGGCUACUGGAG--AAUCAGUCGGCUCCAAAUAUCCACAAAGAUUUACGAACAC .....(---------------(...(((((.((((((..(.((....)))..))))))--.....((.((..........))))..)))))...)).... ( -13.80) >DroEre_CAF1 48596 98 - 1 CACUCCAUUCCUCUCCGCCACUCACAAUCUCCUCCAGCUGACCACUUGGCUACUGGAG--CCUCGGUCGGCUCCAAAUAUUCACAAAGCGUUACGAACAC ...............(((.................(((..(....)..)))..(((((--((......)))))))............))).......... ( -20.20) >DroYak_CAF1 50393 99 - 1 CACUCUCUCCCA-UUUACCUCCUCCAAUCUCCUCCAGCUGACCACUUGGCUACUGGAGAGAAUCAGUCGGCUCCAAAUAUCCACAAAGAUUUACGAACGC ............-....((..((....((((.(((((..(.((....)))..)))))))))...))..)).............................. ( -15.90) >consensus CACACU___CC__U___CC_CCCACAAUCUCCUCCAGCUGACCACUUGGCUACUGGAG__AAUCAGUCGGCUCCAAAUAUCCACAAAGAUUUACGAACAC ...............................((((((..(.((....)))..))))))........(((........................))).... (-11.58 = -11.58 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:02 2006