| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,575,661 – 14,575,754 |
| Length | 93 |
| Max. P | 0.552355 |
| Location | 14,575,661 – 14,575,754 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 80.34 |
| Mean single sequence MFE | -23.12 |
| Consensus MFE | -11.70 |
| Energy contribution | -11.66 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.552355 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14575661 93 - 22224390 UGGCAUUUUGGCUGGCAACUUGAAACCUUUCAACUACACCAAAC--------UGUGAGCCGGCAGC---------------CAACUCCGCUUGCCCC---AUUCUCAGUCACUCGAUUU .((((.....((((((...(((((....)))))...(((.....--------.))).))))))(((---------------.......)))))))..---......((((....)))). ( -20.90) >DroSec_CAF1 51188 89 - 1 UGGCAUUUUCGCUGGCAACUUGAAACCUUUCAACUACACCAAAC--------UGUGAGCC----------------------ACCUCCGCUUGCCCCAUCAUUCUCAGCCACUCGAUUU ((((........(((....(((((....))))).....)))...--------.(..(((.----------------------......)))..).............))))........ ( -14.50) >DroSim_CAF1 51203 96 - 1 UGGCAUUUUGGCUGGCAACUUGAAACCUUUCAACUACACCAAAC--------UGUGAGCCACCAGC---------------CACCUCCGCUUGCCCCAUCAUUCUCAGCCACUCGAUUU ((((....(((((((....(((((....)))))...(((.....--------.))).....)))))---------------)).....(....).............))))........ ( -19.20) >DroEre_CAF1 45378 107 - 1 UGGCAUUUUGGCUGGCAACUUGAAACCUUUCAGCUACACAGAACUGUGAAACUGUGAGCCACCAGC--------CACCAGCCACC-UCGGUUGCCCC---AUUCUCAGCCACUCGAUUU ((((....(((((((.....((((....))))(((.(((((..........))))))))..)))))--------)).(((((...-..)))))....---.......))))........ ( -32.80) >DroYak_CAF1 47545 107 - 1 UGGCAUUUUGGCUGGCAACUUGAAACCUUUCAACUACACAAAAC--------UGUGAGCCACCAGCCCAGCAGCUAGUAGCCACC-UCGGUUGCCCC---AUUCCCAGCCACUCGAUUU ((((.....((((((....(((((....)))))...((((....--------)))).....)))))).........((((((...-..))))))...---.......))))........ ( -28.20) >consensus UGGCAUUUUGGCUGGCAACUUGAAACCUUUCAACUACACCAAAC________UGUGAGCCACCAGC_______________CACCUCCGCUUGCCCC___AUUCUCAGCCACUCGAUUU ((((....(((((.(((..(((((....)))))...................))).)))))...........................(....).............))))........ (-11.70 = -11.66 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:01 2006