Locus 5640

Sequence ID X_DroMel_CAF1
Location 14,573,548 – 14,573,643
Length 95
Max. P 0.554338
window9160

overview

Window 0

Location 14,573,548 – 14,573,643
Length 95
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 83.16
Mean single sequence MFE -23.02
Consensus MFE -16.62
Energy contribution -16.46
Covariance contribution -0.16
Combinations/Pair 1.06
Mean z-score -1.58
Structure conservation index 0.72
SVM decision value 0.04
SVM RNA-class probability 0.554338
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14573548 95 + 22224390
ACAUGUGAAU---AGAGCUCUCGAAUAAUUAGUGAAUAAUAAUGAAUGGCA--GUGCACAAAUGUGAACUUGCA------------------ACUCAAUGAACUUGAGGGCAGUAAAA--
..........---...((((((((...((((.....))))..(((...(((--((.(((....))).)).))).------------------..)))......)))))))).......-- ( -20.10)
>DroSec_CAF1 49037 116 + 1
AGAUGUGAAUAGUAGAGCUCUCGAAUAAUUAGUGAAUAAUAAUGAAUGGCA--GUGCACAAAUGUGAACUUGCAGCUUCAACUGCACUGCAAACUCAAUGAACUUGAGGGCAGUAAAA--
................((((((((...((((.....))))..(((...(((--(((((......((((........))))..))))))))....)))......)))))))).......-- ( -26.80)
>DroSim_CAF1 49042 118 + 1
AGAUGUGAAUAGUAGAGCUCUCGAAUAAUUAGUGAAUAAUAAUGAAUGGCA--GUGCACAAAUGUGAACUUGCAACUUCAACUGCACUGCAAACUCAAUGAACUUGAGGGCAGUAAAAAA
................((((((((...((((.....))))..(((...(((--(((((......((((........))))..))))))))....)))......))))))))......... ( -26.80)
>DroEre_CAF1 43255 95 + 1
AGCUGCGAAU---AGAGCUCUCGAAUAAUUAGUGAAUAAUAAUGAUUGGCA--GUGCACAAAUGUGAACUUGCAA------------------CCCAAUGAACUUGAGGGCAAUCAAA--
..........---...((((((((.((((((...........))))))(((--((.(((....))).)).)))..------------------..........)))))))).......-- ( -19.40)
>DroYak_CAF1 45387 110 + 1
AGAUGUGAAU---AGAGCUCUCGAAUAAUUAGUGAAUAAUAAUGAGUGGCAAUGUGUACGAAUGUGAACUUGCAACUUUAACU-----GAAAACUCAAUGAACUUGAGGGCAGUCAAA--
..........---...((((((((...((((((..........((((.((((.((.(((....))).)))))).)))).....-----....))).)))....)))))))).......-- ( -22.01)
>consensus
AGAUGUGAAU___AGAGCUCUCGAAUAAUUAGUGAAUAAUAAUGAAUGGCA__GUGCACAAAUGUGAACUUGCAACUU_AACU_____G_AAACUCAAUGAACUUGAGGGCAGUAAAA__
................((((((((...((((.....))))........(((.....(((....)))....)))..............................))))))))......... (-16.62 = -16.46 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:56 2006