| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,570,534 – 14,570,624 |
| Length | 90 |
| Max. P | 0.542442 |
| Location | 14,570,534 – 14,570,624 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.33 |
| Mean single sequence MFE | -28.05 |
| Consensus MFE | -20.17 |
| Energy contribution | -20.20 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.542442 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14570534 90 - 22224390 --CUGGGGUGGUUAGUUG--AGUGCGUCUCGUUGCACUUCAUUGAGCCGUGCAAGUGUUAAAAGUGUAGCAAAUUGCGUGGUUUUUAUGCAUCG-------------------------- --....((((.(((((.(--((((((......))))))).)))))(((((((((.(((((......)))))..))))))))).......)))).-------------------------- ( -26.70) >DroEre_CAF1 40489 90 - 1 --CUGGGGUGGUUAGUUG--AGUGCGUCUCGUUGCACUUCAUUGAGCCGUGCAAGUGUUAAAAGUGUAGCAAAUUGCGUGGUUUUUAUGCAUCG-------------------------- --....((((.(((((.(--((((((......))))))).)))))(((((((((.(((((......)))))..))))))))).......)))).-------------------------- ( -26.70) >DroWil_CAF1 45878 88 - 1 --CUGG----GUGAGUUGGCACUGCGUCUCGUUGCACUUCAUUGAGCCGUGCAAGUGUUAAAAGUGUAGCAAAUUGCGUGGUUUUUAUGCCAAU-------------------------- --....----....(((((((.((((......)))).......(((((((((((.(((((......)))))..)))))))))))...)))))))-------------------------- ( -25.00) >DroYak_CAF1 42505 90 - 1 --AUGGGGUGGUUAGUUG--AGUGCGUCUCGUUGCACUUCAUUGAGCCGUGCAAGUGUUAAAAGUGUAGCAAAUUGCGUGGUUUUUAUGCAUCG-------------------------- --....((((.(((((.(--((((((......))))))).)))))(((((((((.(((((......)))))..))))))))).......)))).-------------------------- ( -26.70) >DroAna_CAF1 71054 88 - 1 ----GGGACGGUUAGUUG--AGUGCGUCUCUUUGCACUUCAUUGAGCCGUGCAAGUGUUAAAAGUGUAGCAAAUUGUGUGGUUUUUAUGCCCCC-------------------------- ----(((.((.(((((.(--((((((......))))))).)))))((((..(((.(((((......)))))..)))..)))).....)))))..-------------------------- ( -27.50) >DroPer_CAF1 51662 118 - 1 GGAUUGCUGGGUUAGUUG--AGUGCGUCUCGUUGCACUUCAUUGAGCCGUGCAAGUGUUAAAAGUGUAGCAAAUUGCGUGGUUUUUAUGCCACCUCCCACCUCCUCCGCCCUCCAUUCCC ((((((((((.(((((.(--((((((......))))))).))))).))).))))(((......(((..((.....))(((((......)))))....)))......)))..)))...... ( -35.70) >consensus __CUGGGGUGGUUAGUUG__AGUGCGUCUCGUUGCACUUCAUUGAGCCGUGCAAGUGUUAAAAGUGUAGCAAAUUGCGUGGUUUUUAUGCAUCG__________________________ ....................((((((......)))))).(((.(((((((((((.(((((......)))))..)))))))))))..)))............................... (-20.17 = -20.20 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:53 2006