Locus 5636

Sequence ID X_DroMel_CAF1
Location 14,566,739 – 14,566,843
Length 104
Max. P 0.830661
window9154

overview

Window 4

Location 14,566,739 – 14,566,843
Length 104
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 76.81
Mean single sequence MFE -16.32
Consensus MFE -12.00
Energy contribution -12.00
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.25
Structure conservation index 0.74
SVM decision value 0.71
SVM RNA-class probability 0.830661
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14566739 104 + 22224390
CAAGUACAUCGUACGUUGUAGUAUCAUUUGCACGUACUUGUCACUCGAGUCGAGCCGUCCUUUCCAUUCCUUUC----------CCUUGAUUCCCCACCAGAAUCCUCUACCUU
..((((((..((((((.((((......)))))))))).))).))).((((((((....................----------.))))))))..................... ( -18.00)
>DroPse_CAF1 45627 85 + 1
CAAGUACAUCGUACGCUGUAGUAUCAUUUGCACGUACUUGUCACUCGAGUCGUGCC-------CCA----------------------AAGCUCCCACCGCACCCCCCCACCAC
...((((...))))((.(((((.......(((((.(((((.....)))))))))).-------...----------------------..)))...)).))............. ( -17.12)
>DroSec_CAF1 42413 104 + 1
CAAGUACAUCGUACGUUGUAGUAUCAUUUGCACGUACUUGUCACUCGAGUAGAGCCGUCCUUUCCAUUCCUUUC----------CCUCGAUUCCCCACCAGAAUCCUCCACCUC
..((((((..((((((.((((......)))))))))).))).))).((((.(((.......))).)))).....----------....(((((.......)))))......... ( -16.60)
>DroEre_CAF1 36734 100 + 1
CAAGUACAUCGUACGUUGUAGUAUCAUUUGCACGUACUUGUCACUCGAGUCGAGCCGUCCUUUCCAUUCCUUUC----------CCUCGA--UCCCACCAGCAAUACCCAUC--
..((((((..((((((.((((......)))))))))).))).))).(..(((((....................----------.)))))--..).................-- ( -16.30)
>DroYak_CAF1 38621 114 + 1
CAAGUACAUCGUACGUUGUAGUAUCAUUUGCACGUACUUGUCACUCGAGUCGAGCCGUCCUUUCCAUUCCUUUCCAUUCCUAUCCCUUGAAUCCCCACCAGAAAUACCCAUCCA
((((.(((..((((((.((((......)))))))))).)))..((((...))))...............................))))......................... ( -14.60)
>DroPer_CAF1 45616 85 + 1
CAAGUACAUCGUACGCUGUAGUAUCAUUUGCACGUACUUGUCACUCGAGUCGUGCC-------CCA----------------------AAGCUCCCACCAAACCCCCCCACCAC
..((((((..(((((.(((((......)))))))))).))).))).((((..((..-------.))----------------------..)))).................... ( -15.30)
>consensus
CAAGUACAUCGUACGUUGUAGUAUCAUUUGCACGUACUUGUCACUCGAGUCGAGCCGUCCUUUCCAUUCCUUUC__________CCU_GAGUCCCCACCAGAAACCCCCACCAC
(.((((((..(((((.(((((......)))))))))).))).))).)................................................................... (-12.00 = -12.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:50 2006