Locus 5635

Sequence ID	X_DroMel_CAF1
Location	14,565,352 – 14,565,467
Length	115
Max. P	0.782301

overview

Window 3

Location	14,565,352 – 14,565,467
Length	115
Sequences	4
Columns	115
Reading direction	reverse
Mean pairwise identity	70.85
Mean single sequence MFE	-28.08
Consensus MFE	-13.71
Energy contribution	-14.90
Covariance contribution	1.19
Combinations/Pair	1.25
Mean z-score	-1.97
Structure conservation index	0.49
SVM decision value	0.56
SVM RNA-class probability	0.782301
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14565352 115 - 22224390
CGGAAGUGAAGGGAUCACAUCCGUGAUUGGAAACAGUGACAACUUUUCACGAAGAUCCUAACGUCGAAGAGGUUGUGUUAUCUAUUUACUUCAAAGAGUAAGCAAUCGGAAUUCA
..((((((((.((((((((.((((.((((....)))).))...((((((((..........))).))))))).))))..)))).))))))))...((((...........)))). ( -30.90)
>DroSim_CAF1 41934 88 - 1
CGGAAGUGAAGGGAUCACAUCCGUGAUUGGAAACAG---------------------------UCGAAGAGGUUAUGUAAUCUAUUUACUUCAAAGAGUAAACAAACGGAAUUCA
..((((((((.((((.((((((.((((((....)))---------------------------)))....))..)))).)))).))))))))...((((...(....)..)))). ( -26.30)
>DroEre_CAF1 35451 110 - 1
CGGAAGCGAAGGGAUCACAUCCGUGACUGGAAACAGUGACUGCUCUUCACGAAGAUCUGAACGUCGCAGCGGUUAUCU-----AUCCACUUGAAAAUGUGAACAAUCGGAAUUCG
.(((((((...((((...))))((.((((....)))).)))))).))).((((..(((((...(((((....(((...-----.......)))...)))))....))))).)))) ( -29.60)
>DroYak_CAF1 37268 111 - 1
CGGAAGUGAAGGGCACACAUCCGUGAUCGGAAACAGUGACUGCUUUUCACGAAGAUCUAAAAGCUCAAGAGGUUCCGUA----AUCUACUUAAAAAAGUGAACAAUCUGUAUAAA
((((((((((((((((((.((((....))))....)))..))))))))))...((.(.....).))......)))))..----...(((((....)))))............... ( -25.50)
>consensus
CGGAAGUGAAGGGAUCACAUCCGUGAUUGGAAACAGUGACUGCUUUUCACGAAGAUCU_AACGUCGAAGAGGUUAUGUA____AUCUACUUCAAAAAGUAAACAAUCGGAAUUCA
.(((.((((.....)))).)))((.((((....)))).))............................................(((((((....)))))))............. (-13.71 = -14.90 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:49 2006