Locus 5634

Sequence ID X_DroMel_CAF1
Location 14,563,982 – 14,564,076
Length 94
Max. P 0.547030
window9152

overview

Window 2

Location 14,563,982 – 14,564,076
Length 94
Sequences 3
Columns 106
Reading direction reverse
Mean pairwise identity 75.96
Mean single sequence MFE -33.25
Consensus MFE -18.18
Energy contribution -21.85
Covariance contribution 3.67
Combinations/Pair 1.14
Mean z-score -1.93
Structure conservation index 0.55
SVM decision value 0.03
SVM RNA-class probability 0.547030
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14563982 94 - 22224390
CCUCCGUACUUAUUUUAUUUCCCUAUUCCCGCUCCGAUCUCCUCUGCCGACUGGGAGGUCUGGACUGGGUAUGGGUAUGGGUCUC------------GUAGUUGAC
...((((((((((..............((((.((((((((((.(........)))))))).))).)))).))))))))))(((..------------......))) ( -31.06)
>DroSec_CAF1 39991 106 - 1
CCUCCAUACUUAUUUUAUUUCCCUAUUCUCGCUCCGGUCUCCUCUGCCGACUGGGAGGUCUGGACUGGGUAUGGAUAUGGGUCUGGGUCUGGGUAUGGGAGUUGAC
(..(((((((((..((....((((((((..((.((((((((((((........)))))...)))))))))..))))).)))....))..)))))))))..)..... ( -38.90)
>DroEre_CAF1 34060 87 - 1
CCUCCGUACCUAUUUUAUUUCCCCAUUCCCGCCCCGGUCUCCUCCGCCGACUGGGAGGUCUCGACUGGGCAU-------------------GGUCUGGGAGCUGAC
.....................((((..((...(((((((.(((((........)))))....)))))))...-------------------))..))))....... ( -29.80)
>consensus
CCUCCGUACUUAUUUUAUUUCCCUAUUCCCGCUCCGGUCUCCUCUGCCGACUGGGAGGUCUGGACUGGGUAUGG_UAUGGGUCU_______GGU_UGGGAGUUGAC
.((((..(((..........((((((((..((.((((((.(((((........)))))....))))))))..))))).)))..........)))...))))..... (-18.18 = -21.85 +   3.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:48 2006