Locus 5631

Sequence ID X_DroMel_CAF1
Location 14,528,206 – 14,528,310
Length 104
Max. P 0.596845
window9145

overview

Window 5

Location 14,528,206 – 14,528,310
Length 104
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 78.77
Mean single sequence MFE -22.66
Consensus MFE -6.88
Energy contribution -5.96
Covariance contribution -0.92
Combinations/Pair 1.31
Mean z-score -1.96
Structure conservation index 0.30
SVM decision value 0.13
SVM RNA-class probability 0.596845
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14528206 104 + 22224390
GCAUUAAGGGUGAUUUAUACAGAAACGCAGAAACGCACACGUGUCCUCUUUGAGCACAUCAUACAGCUGAGGUUAAUAUUUUAGCUGUGGGGUGAUAAGUUUUA
((.(((((((((.(((.....))).)))....((((....))))...)))))))).((((.((((((((((((....)))))))))))).)))).......... ( -28.00)
>DroSec_CAF1 2965 83 + 1
GCAUUAAGGGUGAUUUAUACACAAACGC------ACACACGUGUCCUCUUUGAGCACAUCAUACAGCUGAGGUUAAUAUCUUA---------------GUUUUA
((.(((((((((.......)))....((------((....))))...)))))))).........(((((((((....))))))---------------)))... ( -17.50)
>DroSim_CAF1 2966 87 + 1
GCAUUAAGGGUGAUUUAUACACAAACGCAGA--CACACACGUGUCCUCUUUGAGCACAUCAUACAGCUGAGGAUAAUAUCUUA---------------GUUUUA
((.(((((((((.......))).......((--(((....)))))..)))))))).........((((((((......)))))---------------)))... ( -18.50)
>DroEre_CAF1 2991 87 + 1
GCACUAAGGGUGAUUUACACACAAACGCAGA--CACACACGUGUCUUCUUUGAACACAUCACACAGUUGCGGCCAACAUCUUAGAUAU--------A-------
...(((((((((((.......((((.(.(((--(((....)))))).))))).....)))))...((((....)))).))))))....--------.------- ( -20.80)
>DroYak_CAF1 3016 100 + 1
GCAUUAAGGGUGAUUUAUACACAAAUGCAGA--CACACACGUGUCCUCCUUGAACACAUCAUACAGUUGAGGUUAAUAUCUUAGCUGUG--GUAAUAGCUUUUA
((.(((((((((.......))).......((--(((....)))))..))))))........((((((((((((....))))))))))))--......))..... ( -28.50)
>consensus
GCAUUAAGGGUGAUUUAUACACAAACGCAGA__CACACACGUGUCCUCUUUGAGCACAUCAUACAGCUGAGGUUAAUAUCUUAG_U_U________A_GUUUUA
......((((((......................(((....)))((((....(((..........)))))))....))))))...................... ( -6.88 =  -5.96 +  -0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:42 2006