Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,616,263 – 1,616,412 |
Length | 149 |
Max. P | 0.979439 |
Location | 1,616,263 – 1,616,377 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 72.84 |
Mean single sequence MFE | -39.55 |
Consensus MFE | -21.44 |
Energy contribution | -24.82 |
Covariance contribution | 3.38 |
Combinations/Pair | 1.14 |
Mean z-score | -2.26 |
Structure conservation index | 0.54 |
SVM decision value | 1.73 |
SVM RNA-class probability | 0.974571 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1616263 114 - 22224390 GCAGGACUGGCGAUCAAGCUGUGUUGGCCAGCAAUCACAGCGGACCUGAAAAGGUCCUUGCCAAGGAGUCCAAGUGUUGAGUAUGUUCAUGUGUGAGUAUCUUAAAGGACUACU------ .......((((((....(((((((((.....))).))))))((((((....))))))))))))((.(((((.....(((((.(((((((....)))))))))))).))))).))------ ( -42.60) >DroSec_CAF1 11975 118 - 1 GCAGGACUGGCGAUCAAGCUGUGUUGGCCAGCAAUCACAGCGGACCUGAAAAGGUCCUUGCCAAGGAGUCCAAGUGUUG--CAUGUCCAUGUGCGAGUAUCUUAAAGGAGGACUAAUCUC ...(((.((((((....(((((((((.....))).))))))((((((....))))))))))))...(((((.....(((--(((......))))))...(((....))))))))..))). ( -44.10) >DroSim_CAF1 27884 118 - 1 GCAGGACUGGCGAUCAAGCUGUGUUGGCCAGCAAUCACAGCGGACCUGAAAAGGUCCUUGCCAAGGAGUCCAAGUGUUG--CAUGUCCAUGUGCGAGUAUCUUAAAGGACGACUACUCUC ...((((((((((....(((((((((.....))).))))))((((((....)))))))))))....))))).......(--(((......))))((((((((....)))....))))).. ( -44.20) >DroYak_CAF1 13799 98 - 1 GCAGGACUGGCGAUCAAGCUGUUG---------------GGGCCCAGCA----AUCACAGCAAAGGAGCCCAAGUAGCCAG-GCAUCCAUG--UACAUAUCUUAAAGGGUGAAUACCUAC ..(((.(((((......(((....---------------((((((.((.----......))...)).)))).))).)))))-.(((((...--.............)))))....))).. ( -27.29) >consensus GCAGGACUGGCGAUCAAGCUGUGUUGGCCAGCAAUCACAGCGGACCUGAAAAGGUCCUUGCCAAGGAGUCCAAGUGUUG__CAUGUCCAUGUGCGAGUAUCUUAAAGGACGACUACUCUC ...((((((((......(((((((((.....))).))))))((((((....))))))..)))....)))))............(((((..................)))))......... (-21.44 = -24.82 + 3.38)
Location | 1,616,297 – 1,616,412 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 97.66 |
Mean single sequence MFE | -35.40 |
Consensus MFE | -34.20 |
Energy contribution | -34.20 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.78 |
Structure conservation index | 0.97 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.763442 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1616297 115 + 22224390 UCAACACUUGGACUCCUUGGCAAGGACCUUUUCAGGUCCGCUGUGAUUGCUGGCCAACACAGCUUGAUCGCCAGUCCUGCGUGAAUCCCCCGUCCACAAGGCCCAGAGAUCAUUC ....(((..(((((....(((..((((((....))))))((((((.(((.....)))))))))......))))))))...)))......((........)).............. ( -34.50) >DroSec_CAF1 12014 112 + 1 -CAACACUUGGACUCCUUGGCAAGGACCUUUUCAGGUCCGCUGUGAUUGCUGGCCAACACAGCUUGAUCGCCAGUCCUGCGUGAAUCCCC--UCCACAAGGCCCAGAGAUCAUUC -...(((..(((((....(((..((((((....))))))((((((.(((.....)))))))))......))))))))...))).....((--(.....))).............. ( -34.60) >DroSim_CAF1 27923 112 + 1 -CAACACUUGGACUCCUUGGCAAGGACCUUUUCAGGUCCGCUGUGAUUGCUGGCCAACACAGCUUGAUCGCCAGUCCUGCGUGAAUCCCC--UUCACAAGGCCCAGAGAUCAUUC -.......(((.(((.(((((..((((((....))))))((((((.(((.....)))))))))......))))).(((..(((((.....--))))).)))....))).)))... ( -37.10) >consensus _CAACACUUGGACUCCUUGGCAAGGACCUUUUCAGGUCCGCUGUGAUUGCUGGCCAACACAGCUUGAUCGCCAGUCCUGCGUGAAUCCCC__UCCACAAGGCCCAGAGAUCAUUC ........(((.(((.(((((..((((((....))))))((((((.(((.....)))))))))......))))).(((..(((...........))).)))....))).)))... (-34.20 = -34.20 + -0.00)
Location | 1,616,297 – 1,616,412 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 97.66 |
Mean single sequence MFE | -46.50 |
Consensus MFE | -44.57 |
Energy contribution | -44.90 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.89 |
Structure conservation index | 0.96 |
SVM decision value | 1.84 |
SVM RNA-class probability | 0.979439 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1616297 115 - 22224390 GAAUGAUCUCUGGGCCUUGUGGACGGGGGAUUCACGCAGGACUGGCGAUCAAGCUGUGUUGGCCAGCAAUCACAGCGGACCUGAAAAGGUCCUUGCCAAGGAGUCCAAGUGUUGA ....(((((((.(.((....)).).)))))))(((...((((((((((....(((((((((.....))).))))))((((((....)))))))))))....)))))..))).... ( -48.40) >DroSec_CAF1 12014 112 - 1 GAAUGAUCUCUGGGCCUUGUGGA--GGGGAUUCACGCAGGACUGGCGAUCAAGCUGUGUUGGCCAGCAAUCACAGCGGACCUGAAAAGGUCCUUGCCAAGGAGUCCAAGUGUUG- ....(((((((...((....)).--)))))))(((...((((((((((....(((((((((.....))).))))))((((((....)))))))))))....)))))..)))...- ( -46.60) >DroSim_CAF1 27923 112 - 1 GAAUGAUCUCUGGGCCUUGUGAA--GGGGAUUCACGCAGGACUGGCGAUCAAGCUGUGUUGGCCAGCAAUCACAGCGGACCUGAAAAGGUCCUUGCCAAGGAGUCCAAGUGUUG- ...((..((((.(((((((((((--.....)))))).))).))(((((....(((((((((.....))).))))))((((((....)))))))))))..))))..)).......- ( -44.50) >consensus GAAUGAUCUCUGGGCCUUGUGGA__GGGGAUUCACGCAGGACUGGCGAUCAAGCUGUGUUGGCCAGCAAUCACAGCGGACCUGAAAAGGUCCUUGCCAAGGAGUCCAAGUGUUG_ ....(((((((...((....))...)))))))(((...((((((((((....(((((((((.....))).))))))((((((....)))))))))))....)))))..))).... (-44.57 = -44.90 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:50 2006