Locus 5629

Sequence ID X_DroMel_CAF1
Location 14,518,380 – 14,518,496
Length 116
Max. P 0.974209
window9143

overview

Window 3

Location 14,518,380 – 14,518,496
Length 116
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 90.78
Mean single sequence MFE -30.04
Consensus MFE -25.30
Energy contribution -26.18
Covariance contribution 0.88
Combinations/Pair 1.09
Mean z-score -1.96
Structure conservation index 0.84
SVM decision value 1.73
SVM RNA-class probability 0.974209
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14518380 116 - 22224390
GAUUGUU---UUUUUUUUUUCAAGUUCAAAAAUGUUGGCUGGCCUCAAGGUAUCAUAUAACGAUUGAAUAAUUGAAUGAAGGGGACAGGGUCAGUCGGACUGGAAAAAUAAUAAUCUGC
(((((((---....((((((((.((((.........((((((((((((....(((.........)))....)))).....(....)..)))))))))))))))))))).)))))))... ( -28.80)
>DroSec_CAF1 58742 116 - 1
GAUUGUU---UUUUGCUUUUCAAGUCCAAAAAUGUUGGCUGGCCUCAAGGUAUCAUAUAACGAUUGAAUAAUUGAAUGAAGGGGACAGGGUCAGUCGGACUGGAAAAAUAAUAAUCUGC
(((((((---......(((((.(((((.........((((((((((((....(((.........)))....)))).....(....)..))))))))))))).)))))..)))))))... ( -29.30)
>DroSim_CAF1 35834 119 - 1
GAUUGUUUGUUUUUUUUUUUCAAGUCCAAAAAUGUUGGCUGGCCUCAAGGUAUCAUAUAACGAUUGAAUAAUUGAAUGAAGGGGACAGGGUCAGUCGGACUGGAAAAAUAAUAAUCUGC
(((((((........((((((.(((((.........((((((((((((....(((.........)))....)))).....(....)..))))))))))))).)))))).)))))))... ( -29.80)
>DroEre_CAF1 39664 112 - 1
GAUUGUU---UUAU-UUU--GAAGUCCAAAAACGCUGGCUGGCCCUGAGGUAUCAUAUAACGACUGAAUAAUUGAAUGA-GGGGACAGGGUCAGUCGGACUGGAAAAAUAAUAAUCCGC
((((((.---.(((-(((--..(((((.........(((((((((((.....((((.(((...........))).))))-.....))))))))))))))))...))))))))))))... ( -32.80)
>DroYak_CAF1 48571 115 - 1
GAUUGUU---UUAU-UUUUGUAAGUCCCAAAAUGUCGGCUGUCCCUAAGAUAUCAAAUAACGAUUGAAUAAUUGAAUGAAGGGGACAGGGUCAGUCGGACUGGAAAAAUAAUAAUCUGC
((((((.---.(((-((((.((.(((((.....)..(((((.((((..............(((((....)))))......(....))))).))))))))))).)))))))))))))... ( -29.50)
>consensus
GAUUGUU___UUUU_UUUUUCAAGUCCAAAAAUGUUGGCUGGCCUCAAGGUAUCAUAUAACGAUUGAAUAAUUGAAUGAAGGGGACAGGGUCAGUCGGACUGGAAAAAUAAUAAUCUGC
(((((((........((((((.(((((.........(((((((((...............(((((....)))))......(....).)))))))))))))).)))))).)))))))... (-25.30 = -26.18 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:41 2006