Locus 5628

Sequence ID X_DroMel_CAF1
Location 14,516,315 – 14,516,418
Length 103
Max. P 0.811807
window9142

overview

Window 2

Location 14,516,315 – 14,516,418
Length 103
Sequences 4
Columns 115
Reading direction forward
Mean pairwise identity 84.71
Mean single sequence MFE -33.62
Consensus MFE -24.01
Energy contribution -25.07
Covariance contribution 1.06
Combinations/Pair 1.03
Mean z-score -1.94
Structure conservation index 0.71
SVM decision value 0.65
SVM RNA-class probability 0.811807
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14516315 103 + 22224390
UUGCGGUCGAAAUUCGGCUGUCGUGGUAGAGUUUUGACCUGCAAUAAUGUGCCAUAUCUCUGGGGAGUUUCGAC---------AAUUCGGAAAGU---UUGUUCCAUACAAAUAU
(((((((((((((((.(((.....))).))))))))))).))))...(((((((......)))((((((((((.---------...))))))...---...)))).))))..... ( -29.60)
>DroSec_CAF1 56679 103 + 1
UUGCGGUCGAAAUUUGGCUGUCGUGGUGGAGUUUUGACCUGCAAUAAUGGGCCAUAUCUCUGGGGUGUUUCGAC---------AACUCGGAAAGU---UGGUUCCAUGUAAAUAU
(((((((((((((((.(((.....))).))))))))))).))))..((((((((....((((((.(((....))---------).))))))....---))).)))))........ ( -38.10)
>DroSim_CAF1 33808 103 + 1
UUGCGGUCGAAAUUCGGCUGUCGUGGUGGAGUUUUGACCUGCAAUAAUGGGCUAUAUCUCUGGGGAGUUUCGAC---------AACUCGGAAAGU---UCGUUCCAUGUAAAUAU
(((((((((((((((.(((.....))).))))))))))).)))).((((((((.....((((((..((....))---------..)))))).)))---)))))............ ( -34.20)
>DroYak_CAF1 45785 115 + 1
UUGCGGUCGAAAUUCGGCUGUCGUGGUAGAGUUUUGACCUGCAAUAAUGGGCCACAUCUCCAGGGAGUUUCGACUCUGCGCUCACUUCGGCAAGACAUGCAAGACAUGUAAAUAU
(((((((((((((((.(((.....))).))))))))))).((.....((((.......)))).(((((....)))))))..........)))).(((((.....)))))...... ( -32.60)
>consensus
UUGCGGUCGAAAUUCGGCUGUCGUGGUAGAGUUUUGACCUGCAAUAAUGGGCCAUAUCUCUGGGGAGUUUCGAC_________AACUCGGAAAGU___UCGUUCCAUGUAAAUAU
(((((((((((((((.(((.....))).))))))))))).))))..(((((......(((....)))((((((.............))))))..........)))))........ (-24.01 = -25.07 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:39 2006