Locus 5627

Sequence ID X_DroMel_CAF1
Location 14,512,009 – 14,512,105
Length 96
Max. P 0.589589
window9141

overview

Window 1

Location 14,512,009 – 14,512,105
Length 96
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 85.30
Mean single sequence MFE -31.98
Consensus MFE -20.18
Energy contribution -21.50
Covariance contribution 1.32
Combinations/Pair 1.12
Mean z-score -2.05
Structure conservation index 0.63
SVM decision value 0.11
SVM RNA-class probability 0.589589
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14512009 96 + 22224390
CCACUGGAUAG-UCCACUGUCCCGCAGGCCAGUGUCCAUGGGCCAGUGGCCACUGGCUGCCAUUCGAUUCAGCUG--CACCUGCACUCGAAAACCAACU
.....((((((-....)))))).((((.((((((.((((......)))).))))))))))..(((((..(((...--...)))...)))))........ ( -34.40)
>DroSec_CAF1 52382 95 + 1
CCACUGGAUAG-UCCACUGUC-CGCAGUCCAGUGUCCGUGGGCCAGUGGCCACUGGCUGCCAUUCGAUUCAGCUG--CACCUGCACUCGAAAACCAACU
.....((((((-....)))))-)((((.((((((.(((........))).))))))))))..(((((..(((...--...)))...)))))........ ( -32.60)
>DroSim_CAF1 29515 95 + 1
CCACUGGAUAG-UCCACUGUC-CGCAGUCCAGUGUCCGUGGGCCAGUGGCCACUGGCUGCCAUUCGAUUCAGCUG--CACCUGCACUCGAAAACCAACU
.....((((((-....)))))-)((((.((((((.(((........))).))))))))))..(((((..(((...--...)))...)))))........ ( -32.60)
>DroEre_CAF1 33443 87 + 1
CCGCUGGAUG--UCCACUGUC-CACUGGCCACUGUCC-------ACUGGCCACUGGCGGCCAUUCGAUUAAGCUG--CACCUGCACUCGAAAACCAGCU
..(((((...--....(((.(-((.((((((......-------..)))))).))))))...(((((....(.((--(....)))))))))..))))). ( -30.60)
>DroYak_CAF1 41423 91 + 1
CCACUGGAUGGUCCCAGUGUC-CAGUGUCCACUGUCC-------GUGGGCCACUGGCUGCCAUUCGAUUCAGCUGCGCACCUGCACUCGAAACCCAACU
.((((((......)))))).(-((((((((((.....-------))))).))))))......(((((..(((........)))...)))))........ ( -29.70)
>consensus
CCACUGGAUAG_UCCACUGUC_CGCAGUCCAGUGUCC_UGGGCCAGUGGCCACUGGCUGCCAUUCGAUUCAGCUG__CACCUGCACUCGAAAACCAACU
.((.(((......))).))....((((.((((((.(((........))).))))))))))..(((((..(((........)))...)))))........ (-20.18 = -21.50 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:38 2006