Locus 5626

Sequence ID X_DroMel_CAF1
Location 14,511,075 – 14,511,180
Length 105
Max. P 0.970791
window9140

overview

Window 0

Location 14,511,075 – 14,511,180
Length 105
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 93.47
Mean single sequence MFE -17.43
Consensus MFE -16.88
Energy contribution -16.56
Covariance contribution -0.32
Combinations/Pair 1.11
Mean z-score -1.43
Structure conservation index 0.97
SVM decision value 1.66
SVM RNA-class probability 0.970791
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14511075 105 + 22224390
AUAUCCACAUAGCCAUCCGGAACCCAUUCUAAUCCAUCCGACAUGGCCCCAUGCCU-------CAACUAUCUUGCCCCAUUGUUUUCCUUUCGCAGCGUGGAAAGCCAAAAA
...(((((...(((((.((((...............))))..))))).........-------........((((.................)))).))))).......... ( -17.39)
>DroSec_CAF1 51439 105 + 1
AUAUCCACAUAGCCAUCCGGAACCCAUCCUAAUCCAUCCGACAUGGCCCCAUGCCC-------CAACUAUCUUGCCCCAUUGUUUUCCUUUCGCAGCGUGGAAAGCCAAAAA
...(((((...(((((.((((...............))))..))))).........-------........((((.................)))).))))).......... ( -17.39)
>DroSim_CAF1 28579 105 + 1
AUAUCCACAUAGCCAUCCGGAACCCAUCCUAAUCCAUCCGACAUGGCCCCAUGCCC-------CAACUAUCUUGCCCCAUUGUUUUCCUUUCGCAGCGUGGAAAGCCAAAAA
...(((((...(((((.((((...............))))..))))).........-------........((((.................)))).))))).......... ( -17.39)
>DroEre_CAF1 32588 108 + 1
AUAUCCACACAGCCAUCCGGAACCCAUCCUAAUCCAUCCGACGUGGCCCCAACCCC----CACCAACUAUCUUGCCCCAUUGUUUUCCGUUCGCAGCGUGGAAAGCCAAAAA
...(((((.(.((....(((((..((................((((.........)----)))(((.....)))......))..)))))...)).).))))).......... ( -18.10)
>DroYak_CAF1 40454 112 + 1
AUAUCCACAUAGCCAUCCGGAACCCAUCCUAAUCCAUCCGACAUGGCCCCAUACCCCAAACACCAACUAUCUUGCCCCAUUGUUUUCCGUUCACAGCGUGGAAAGCCAAAAA
...(((((...(((((.((((...............))))..))))).........................................((.....))))))).......... ( -16.86)
>consensus
AUAUCCACAUAGCCAUCCGGAACCCAUCCUAAUCCAUCCGACAUGGCCCCAUGCCC_______CAACUAUCUUGCCCCAUUGUUUUCCUUUCGCAGCGUGGAAAGCCAAAAA
...(((((...(((((.((((...............))))..)))))................................((((.........)))).))))).......... (-16.88 = -16.56 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:38 2006