| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,510,858 – 14,510,949 |
| Length | 91 |
| Max. P | 0.702525 |
| Location | 14,510,858 – 14,510,949 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 81.64 |
| Mean single sequence MFE | -29.44 |
| Consensus MFE | -20.68 |
| Energy contribution | -21.56 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.702525 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14510858 91 - 22224390 AUACCCGUCAGCUCGACAACAGGGUAUACUCUGCAUAGCUGGAUGUGACAGGACGAAGGGCAGGGAUGCCAAGUCUAAG-----CAAAGCAGAGAG (((((((((.....)))....)))))).((((((....(((.......)))(((....((((....))))..)))....-----....)))))).. ( -30.80) >DroSec_CAF1 51224 89 - 1 AUACCCGUCAGCCCGAAAACGGGGUAUACUCUGCAUAGCUGGAUGUGACAGGACGAAG-GCAGGGAUGCCAAGUCGAAG-----CA-GGCAGAGAG ...(((((..........))))).....((((((....(((.......)))(((...(-(((....))))..)))....-----..-.)))))).. ( -29.10) >DroSim_CAF1 28364 89 - 1 AUACCCGUCAGCCCGACAACAGGGUAUACCCUGCAUAGCUGGAUGUGACAGGACGAAG-GCAGGGAUGCCAAGUCGAAG-----CA-GGCAGAGAG (((((((((.....)))....))))))..(((((....(((.......)))(((...(-(((....))))..)))...)-----))-))....... ( -28.80) >DroEre_CAF1 32366 86 - 1 AUACCCGUCAGCCCGACAACAGGGUAUUUUGUGCACUGCUGGACGUGACAGGACGCAG-GCAGAGGUGCCGGGUCCAAG-----CC-AGCGGA--- (((((((((.....)))....))))))........(((((((.(......((((.(.(-(((....))))).))))..)-----))-))))).--- ( -31.70) >DroYak_CAF1 40210 91 - 1 AUACCCGUCAUACCGACAACAGGGUAUAUUGUGCACUGCUGGAUGUGACAGGACGAGG-GCAGAAAUGCCAAGUUGAAAUGUAAGU-AGCAGA--- (((((((((.....)))....))))))........((((((..(...(((.(((...(-(((....))))..)))....))).).)-))))).--- ( -26.80) >consensus AUACCCGUCAGCCCGACAACAGGGUAUACUCUGCAUAGCUGGAUGUGACAGGACGAAG_GCAGGGAUGCCAAGUCGAAG_____CA_AGCAGAGAG (((((((((.....)))....)))))).((((((....(((.......)))(((...(.(((....))))..))).............)))))).. (-20.68 = -21.56 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:37 2006