Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,510,121 – 14,510,221 |
Length | 100 |
Max. P | 0.905716 |
Location | 14,510,121 – 14,510,221 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 78.27 |
Mean single sequence MFE | -32.37 |
Consensus MFE | -21.27 |
Energy contribution | -23.02 |
Covariance contribution | 1.75 |
Combinations/Pair | 1.13 |
Mean z-score | -2.01 |
Structure conservation index | 0.66 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.905716 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14510121 100 + 22224390 GU--UUGUUUGUUUGCCAACUGUCUGCCUGUCCGUCUGC--UCUGCUCGUUGCUCUCACUGGGCUCAGGGGCAAUAAAAUAAGCAGCCAAAUGAAAUGGCUGCA ..--((((((..(((((..(((...((((........((--..........)).......)))).))).)))))..))))))(((((((.......))))))). ( -31.06) >DroPse_CAF1 37710 98 + 1 GU--UUGUUUGUUUGCCAACUGUCUGUCGU--UGUCUGGGGCGGGCAAACAGCCAGCGAUGGGACCA--GGCAAUAAAAUAAGCAGCGAAAUGAAAUGGCUGCA ..--((((((..(((((.....((((((((--((.(((..(....)...))).))))))))))....--)))))..))))))(((((.(.......).))))). ( -33.90) >DroYak_CAF1 39468 96 + 1 GUUUUUGUUUGUUUGCCAACUGUCUGUCUGCCUGUUCGC--UCUG------ACUCUGACUGGGCUCAGGGGCAAUAAAAUAAGCAGCCAAAUGAAAUGGCUGCA ....((((((..(((((.((.....))...((((...((--((..------.........)))).)))))))))..))))))(((((((.......))))))). ( -30.60) >DroPer_CAF1 37715 98 + 1 GU--UUGUUUGUUUGCCAACUGUCUGUCGU--UGUCUGGGGCGGGCAAACAGCCAGCGAUGGGACCA--GGCAAUAAAAUAAGCAGCGAAAUGAAAUGGCUGCA ..--((((((..(((((.....((((((((--((.(((..(....)...))).))))))))))....--)))))..))))))(((((.(.......).))))). ( -33.90) >consensus GU__UUGUUUGUUUGCCAACUGUCUGUCGG__UGUCUGC__CCGGCAAACAGCCAGCAAUGGGACCA__GGCAAUAAAAUAAGCAGCCAAAUGAAAUGGCUGCA ....((((((..(((((....(((((((((...(.(((...........))))..))))))))).....)))))..))))))(((((((.......))))))). (-21.27 = -23.02 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:36 2006