Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,615,422 – 1,615,517 |
Length | 95 |
Max. P | 0.500000 |
Location | 1,615,422 – 1,615,517 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 78.01 |
Mean single sequence MFE | -36.55 |
Consensus MFE | -24.34 |
Energy contribution | -25.40 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.15 |
Mean z-score | -1.55 |
Structure conservation index | 0.67 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1615422 95 + 22224390 GCGGAGCAACAGAACUUAUUUGUUUUGGCUGCCAGCCGCCGGUUGGAGCAGU-CGCCGAGCCAGGUCCGUCCGAGGACUACUCCUCCCCAGCCAAG ((((.(((.((((((......))))))..)))...)))).((((((.((...-.)).(((...(((((......))))).)))....))))))... ( -36.00) >DroSec_CAF1 11086 95 + 1 GCGGAGCAGCAGAACUUAUUUGUUUUGUCUGCCAGCCGCCGGUUGGAGCAGU-CGCCGAGCCAGGUCCGUCCGAGGACUGCUCCUCCCCAGCCAAG ((((.((((((((((......)))))).))))...)))).((((((.((...-.)).((((..(((((......)))))))))....))))))... ( -42.60) >DroSim_CAF1 27048 95 + 1 GCGGAGCAGCAGAACUUAUUUGUUUUGUCUGCCAGCCGCCGGUUGGAGCAGU-CGCCGAGCCAGGUCCGUCCGAGGACUGCUCCUCCCCAGCCAAG ((((.((((((((((......)))))).))))...)))).((((((.((...-.)).((((..(((((......)))))))))....))))))... ( -42.60) >DroEre_CAF1 11860 75 + 1 GCGAGGCAGCGGAACCUUUUUGUUUUGGCUGCCCGCCGUUGCUGGGAACACUCCGCCGCACCAGAUCCAUCCAAG--------------------- (((.((((((.(((.(.....).))).))))))))).(.(((.((((....))).).))).).............--------------------- ( -25.00) >consensus GCGGAGCAGCAGAACUUAUUUGUUUUGGCUGCCAGCCGCCGGUUGGAGCAGU_CGCCGAGCCAGGUCCGUCCGAGGACUGCUCCUCCCCAGCCAAG ((((.((((((((((......)))))).))))...)))).((((.(.((.....))).)))).(((((......)))))................. (-24.34 = -25.40 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:47 2006