Locus 5619

Sequence ID X_DroMel_CAF1
Location 14,491,838 – 14,491,949
Length 111
Max. P 0.890260
window9132

overview

Window 2

Location 14,491,838 – 14,491,949
Length 111
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 78.86
Mean single sequence MFE -21.24
Consensus MFE -5.80
Energy contribution -9.88
Covariance contribution 4.08
Combinations/Pair 1.13
Mean z-score -2.30
Structure conservation index 0.27
SVM decision value 0.96
SVM RNA-class probability 0.890260
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14491838 111 + 22224390
AGACCGCCAAUAAGUGUGCCUAAUUUAACCUAAAUAGGCGUCCAAAGUUACUUGAAAUCAUUACUCACCGAUAGUAAUAAUGAUAGGUAAUAAGUACACUGUUCAACAUAA
............((((((((((.((......)).))))).......((((((((..((.((((((.......)))))).))..))))))))....)))))........... ( -20.70)
>DroSec_CAF1 17099 108 + 1
AGACCGCCAAUAACUGUGCCUAAUUUAACCUAAAUAGGCGUCCAAAGUUACCUGAAAUCAUUACUCACCGAUAGUA---AUGACAGGUAAUAAGUACACUGGUCAACAAAA
.((((............(((((.((......)).))))).......((((((((...((((((((.......))))---)))))))))))).........))))....... ( -29.60)
>DroSim_CAF1 23706 108 + 1
AGACCGCCAAUAACUGUGCCUAAUUUAACCUAAAUAGGCGUCCAAAGUUGCCUGAAAUCAUUACUCAUCGAUAGUA---AUGAAAGGUAAUAACUACACUGGUCAACAAAA
.((((............(((((.((......)).))))).......(((((((....((((((((.......))))---)))).))))))).........))))....... ( -27.60)
>DroEre_CAF1 15199 84 + 1
AGUUCACCAAUAACUGGGCCUAAUUCAACCUAAAUAGGCGUCCAAAGUGAUCCGAAAUCAUUACUCAAUGAUAGC---------------------------UCAACAAAA
..(((.(((.....)))(((((.((......)).)))))..............)))((((((....))))))...---------------------------......... ( -11.70)
>DroYak_CAF1 20394 104 + 1
AGUCCACCAAUAAGUGUGCCUAAUUCAACCUAAAUAGGAGUCCACAGUUACCUGGAAUCAUUACUCAGUGAUUGCA---AUGAUAGAUA----GAACACUGGCCAACAAAA
.((...(((....((((..(((..(((.(((....)))..............((.(((((((....))))))).))---.)))....))----).)))))))...)).... ( -16.60)
>consensus
AGACCGCCAAUAACUGUGCCUAAUUUAACCUAAAUAGGCGUCCAAAGUUACCUGAAAUCAUUACUCACCGAUAGUA___AUGAUAGGUAAUAAGUACACUGGUCAACAAAA
.((((............(((((.((......)).))))).......((((((((.......((((.......)))).......)))))))).........))))....... ( -5.80 =  -9.88 +   4.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:30 2006