Locus 5617

Sequence ID X_DroMel_CAF1
Location 14,483,138 – 14,483,228
Length 90
Max. P 0.756921
window9129

overview

Window 9

Location 14,483,138 – 14,483,228
Length 90
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 70.28
Mean single sequence MFE -19.88
Consensus MFE -0.30
Energy contribution -1.10
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.97
Structure conservation index 0.02
SVM decision value 0.49
SVM RNA-class probability 0.756921
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14483138 90 - 22224390
CGAGAUAUUAUG--CAUAUACGCA---------------------------AUGUAUCUUUUCAUAAUGAUGCGCAAAAAGCAAUAAACAAUUUCCUAUGCAUAUGCUUCUGGCCAAAC
(.(((...((((--((((......---------------------------..(((((..........)))))((.....))..............))))))))....))).)...... ( -16.70)
>DroSec_CAF1 8455 112 - 1
CGAGAUAUUAUG--CAUGUACGUAU-----CUUUAUGUAUGUAUCUUAUGUAUGUAUCUUUUCAUAAUGAUUCGCCAAAAGCAAUAAACAAUUUCUAAUGCAUAUGCUUCUGGCCAAAC
.(((((((.(((--(((((((((((-----......))))))))...))))))))))))).............((((.(((((.((..((........))..))))))).))))..... ( -25.50)
>DroSim_CAF1 14937 109 - 1
CGAGAUAUU-----CAUGUACGUAU-----CUUUAUGUAUGUAUCAUAUGUAUGUAUCUUUUCAUAAUGAUUCGCCAAAAGCAAUAAACAAUUUCUAAUGCAUAUGCUUCUGGCCAAAC
.(((((((.-----(((((((((((-----......))))))))...)))...))))))).............((((.(((((.((..((........))..))))))).))))..... ( -21.70)
>DroEre_CAF1 6800 105 - 1
UUAGUUUAUAUA--CGUAAACGUAUUGGCACUUUCCGCA------------AUGUAUCAUUUCACAAUGAUGCGCAAAAAUCAAUAAACAAUUUGCAAUGCACAUAUUUCUAGCCAAAC
...((((((...--.))))))...(((((.......(((------------..((((((((....))))))))(((((.............)))))..)))...((....))))))).. ( -21.12)
>DroYak_CAF1 11772 105 - 1
UUA-UUCAGAUAUGUAUAAACG-AUUUGCUGUUUCCGCA------------AUAUAUCAUUUCAUAAUAAUGCGCAAAAGUCAAUAAACAAUUUCUAAUGCAUAUCUUGCUAGCCAAGC
...-...(((((((((((((((-......))))).((((------------.(((...........))).)))).......................)))))))))).(((.....))) ( -14.40)
>consensus
CGAGAUAUUAUA__CAUAUACGUAU_____CUUUACGCA____________AUGUAUCUUUUCAUAAUGAUGCGCAAAAAGCAAUAAACAAUUUCUAAUGCAUAUGCUUCUGGCCAAAC
....................................................((((((..........))))))............................................. ( -0.30 =  -1.10 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:28 2006