Locus 5612

Sequence ID X_DroMel_CAF1
Location 14,476,244 – 14,476,361
Length 117
Max. P 0.637008
window9115

overview

Window 5

Location 14,476,244 – 14,476,361
Length 117
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 89.28
Mean single sequence MFE -25.37
Consensus MFE -18.90
Energy contribution -19.90
Covariance contribution 1.00
Combinations/Pair 1.13
Mean z-score -1.67
Structure conservation index 0.74
SVM decision value 0.21
SVM RNA-class probability 0.637008
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14476244 117 + 22224390
A---UAAACAAAAGUAAACUUAGAGCAACACCCUCAAGGUGUUUCCCACUAGAUAAUCCAGUGGUCAUCUUUACUUCGAUCUAAAGGUUCGUAAUUAAGUUACCUGGGCAAAGCUCUCUC
.---.................(((((((((((.....)))))).(((..(((((.....(((((......)))))...))))).((((.(........)..)))))))....)))))... ( -25.20)
>DroSec_CAF1 1478 120 + 1
UUUUAUAACAAAAGUCCACUAAGACCAACACCCUCAAGGUGUUUCCCACUAGAUAAUCAAAUGGUCAUCUUUACUCCGAUCUAGAGGUUCGUAAUUAAGUUACCUGGGCAAAGCUCUCUC
.............(((((....((((((((((.....)))))).....((((((........((....))........)))))).)))).(((((...))))).)))))........... ( -23.49)
>DroSim_CAF1 7970 120 + 1
UUUUAAAACAAAAGUCCACUAAGAGCAACACCCUCAAGGUGUUUCCCACUAGAUAAUCAAAUGGUCAUCUUUACUUCGAUCUAGAGGUUCGUAAUUAAGUUACCUGGGCAAAGCUCUCUC
.....................(((((((((((.....)))))).(((.((((((........((....))........))))))((((.(........)..)))))))....)))))... ( -26.19)
>DroYak_CAF1 4100 117 + 1
---UAUAACAAAAGUCCACUUGGAGUAACACCCUCAAGGUAUUUCCCUCUAGAUAAUCAAGUGCUCAUCUUUACUCCGAUCUGGAGGUUUGUAAUUAAGUCACCUGGGCAAAGCCCUCUC
---....(((((..((((.(((((((((.(((.....)))..........((((............)))))))))))))..))))..))))).............((((...)))).... ( -26.60)
>consensus
U__UAAAACAAAAGUCCACUAAGAGCAACACCCUCAAGGUGUUUCCCACUAGAUAAUCAAAUGGUCAUCUUUACUCCGAUCUAGAGGUUCGUAAUUAAGUUACCUGGGCAAAGCUCUCUC
.....................(((((((((((.....)))))).(((.((((((.....(((((......)))))...))))))((((.(........)..)))))))....)))))... (-18.90 = -19.90 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:16 2006