Locus 5611

Sequence ID X_DroMel_CAF1
Location 14,470,300 – 14,470,407
Length 107
Max. P 0.666078
window9114

overview

Window 4

Location 14,470,300 – 14,470,407
Length 107
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.21
Mean single sequence MFE -21.96
Consensus MFE -18.01
Energy contribution -18.57
Covariance contribution 0.56
Combinations/Pair 1.08
Mean z-score -1.37
Structure conservation index 0.82
SVM decision value 0.28
SVM RNA-class probability 0.666078
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14470300 107 - 22224390
UUAUGCUUGGGGGGUGUAUGGGGUAUUUUUGCUUUAAUUAAAUUUUACACAAAUAUUUUGUGCGAUGCGAAAGUAUU-UCCCAAAUUGAAGUUCUAUGCCGAC-GU-----------AGC
......(((((..((((((..(((((((.((................)).)))))))..))))...((....)))).-.))))).........(((((....)-))-----------)). ( -24.19)
>DroPse_CAF1 326 104 - 1
UUAUUUU----G---------GGCAUUUUUACUUUAAUUAAAUUUUACACAAAUAUUUUCUG---UGCAAAAGUAUUUUCCCAAAUUGAAGUUCUAUGCCGUUCAGUCCAUGGCAAUAUC
(((.(((----(---------((......((((((............((((.........))---))..))))))....)))))).))).......((((((.......))))))..... ( -16.14)
>DroSec_CAF1 944 103 - 1
UUAUGUU----GGGUGUAUGGGGUAUUUUUGCUUUAAUUAAAUUUUACACAAAUAUUUUGUGCGAUGCGAAAGUAUU-UCCCAAAUUGAAGUUCUAUGCCGAC-GU-----------AGC
(((((((----((...((((((........(((((((((........(((((.....))))).(((((....)))))-.....))))))))))))))))))))-))-----------)). ( -25.10)
>DroSim_CAF1 7440 103 - 1
UUAUGUU----GGGUGUAUGGGGUAUUUUUGCUUUAAUUAAAUUUUACACAAAUAUUUUGUGCGAUGCGAAAGUAUU-UCCCAAAUUGAAGUUCUAUGCCGAC-GU-----------AGC
(((((((----((...((((((........(((((((((........(((((.....))))).(((((....)))))-.....))))))))))))))))))))-))-----------)). ( -25.10)
>DroYak_CAF1 3554 107 - 1
UUAUGUU----GGGUGUAUGGGGUAUUUUUGCUUUAAUUAAAUUUUACACAAAUAUUUUGUGCGAUGCGAAAGUAUU-UCCCAAAUUGAAGUUCUAUGCCGAC-GUUCUA-------UGC
.......----(..(((....(((((....(((((((((........(((((.....))))).(((((....)))))-.....)))))))))...))))).))-)..)..-------... ( -25.10)
>DroPer_CAF1 326 104 - 1
UUAUUUU----G---------GGCAUUUUUACUUUAAUUAAAUUUUACACAAAUAUUUUCUG---UGCAAAAGUAUUUUCCCAAAUUGAAGUUCUAUGCCGUUCAGUCCAUGGCAAUAUC
(((.(((----(---------((......((((((............((((.........))---))..))))))....)))))).))).......((((((.......))))))..... ( -16.14)
>consensus
UUAUGUU____GGGUGUAUGGGGUAUUUUUGCUUUAAUUAAAUUUUACACAAAUAUUUUGUGCGAUGCGAAAGUAUU_UCCCAAAUUGAAGUUCUAUGCCGAC_GU___________AGC
.....................(((((....(((((((((........(((((.....))))).(((((....)))))......)))))))))...))))).................... (-18.01 = -18.57 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:15 2006