Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,614,154 – 1,614,284 |
Length | 130 |
Max. P | 0.608505 |
Location | 1,614,154 – 1,614,252 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 85.89 |
Mean single sequence MFE | -25.67 |
Consensus MFE | -19.46 |
Energy contribution | -20.39 |
Covariance contribution | 0.93 |
Combinations/Pair | 1.04 |
Mean z-score | -2.32 |
Structure conservation index | 0.76 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.608505 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1614154 98 - 22224390 UGCCAUAAAUUCAUAUUCCCAUCAUUCAAUUGACAAAUGGCCAUAUGUGGCCAGUGACAUGGUUUCUCCGCCAUCACCCCCGCC---------------CAUAAGUGGAGGCA .(((.................(((......)))....((((((....))))))((((..((((......))))))))..((((.---------------.....)))).))). ( -25.90) >DroSec_CAF1 9832 98 - 1 UGCCAUAAAUUCAUAUUCCCAUCAUUCAAUUGACAAAUGGCCAUAUGUGGCCAGUGACAUGGUUUCUCCGCCAUCACCCCCGCC---------------CAUAAGUGGAGGCA .(((.................(((......)))....((((((....))))))((((..((((......))))))))..((((.---------------.....)))).))). ( -25.90) >DroSim_CAF1 25792 98 - 1 UGCCAUAAAUUCAUAUUCCCAUCAUUCAAUUGACAAAUGGCCAUAUGUGGCCAGUGACAUGGUUUCUCCGCCAUAACCCCCGCC---------------CAUAAGUGGAGGCA .(((......((((.......(((......)))....((((((....)))))))))).(((((......))))).....((((.---------------.....)))).))). ( -26.00) >DroEre_CAF1 10573 98 - 1 UGCCAUAAAUUCAUAUUCCCAUCAUUCAAUUGACAAAUGGCCAUAUGUGGCCAGUGACAUGGUUUCUCCACCAGCUCCCCCCUC---------------CACAAGUGGAGGCA .(((((....((((.......(((......)))....((((((....)))))))))).))))).................((((---------------((....)))))).. ( -26.00) >DroYak_CAF1 11567 113 - 1 UGCCAUAAAUUCAUAUUCCCAUCAUUCAAUUGACAAAUGGCCAUAUGUGGCCAGUGACAUGGUUUCUCCGCCAUCGCCGCCAUCGCCGCCAUCGUCGCCAAUAAGUGGAGGCA .(((...........................(((..(((((.....(((((..((((..((((......)))))))).)))))....))))).))).(((.....))).))). ( -29.70) >DroAna_CAF1 11382 84 - 1 UGCCAUAAAUUCAUAUUCCCAUCAUUCAAUUGACAAAUGGCCAUAUGUGGCCAGUGACAUGGUUUCU--------ACCCCCACC---------------CGCAAGGA------ .(((((....((((.......(((......)))....((((((....)))))))))).)))))....--------........(---------------(....)).------ ( -20.50) >consensus UGCCAUAAAUUCAUAUUCCCAUCAUUCAAUUGACAAAUGGCCAUAUGUGGCCAGUGACAUGGUUUCUCCGCCAUCACCCCCGCC_______________CAUAAGUGGAGGCA .(((((....((((.......(((......)))....((((((....)))))))))).))))).(((((((.................................))))))).. (-19.46 = -20.39 + 0.93)
Location | 1,614,179 – 1,614,284 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 74.70 |
Mean single sequence MFE | -26.00 |
Consensus MFE | -12.36 |
Energy contribution | -12.92 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.26 |
Mean z-score | -1.72 |
Structure conservation index | 0.48 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1614179 105 + 22224390 UGGCGGAGAAACCAUGUCACUGGCCACAUAUGGCCAUUUGUCAAUUGAAUGAUGGGAAUAUGAAUUUAUGGCAUUAAAAUCUUUUGGUUUUUCGGCCGUUUGCAC-------- .(((.((((((((((((((.((((((....))))))((..(((......)))..))............)))))...........))))))))).)))........-------- ( -33.30) >DroVir_CAF1 15359 86 + 1 -----------------UACUCCCCACAUACGACCAUUUGUAAAUUGAAUGAUGGAUUUAUGAGCUUAUAGCAUUAA-GUCCUUUGGUUUUUGACAGAAUUAAA--------- -----------------...................(((((.....((((.(.(((((((...((.....))..)))-))))..).))))...)))))......--------- ( -13.00) >DroGri_CAF1 12318 87 + 1 -----------------CAUUCACUGCAUUUGACCAUUUGUAAAUUGAAUGAUGGAUAUGUGAGUUUAUAGCAUUAA-GUCGUUUGGUUUUUGGCUGGAUUGAAC-------- -----------------..((((....((((..(((.....((((..((((((....((((.........))))...-))))))..)))).)))..)))))))).-------- ( -16.50) >DroSim_CAF1 25817 104 + 1 UGGCGGAGAAACCAUGUCACUGGCCACAUAUGGCCAUUUGUCAAUUGAAUGAUGGGAAUAUGAAUUUAUGGCAUUAAAAUCUUUUG-UUUUUCGGCCGUUUGCAC-------- .(((.(((((((.((((((.((((((....))))))((..(((......)))..))............))))))...........)-)))))).)))........-------- ( -28.60) >DroEre_CAF1 10598 105 + 1 UGGUGGAGAAACCAUGUCACUGGCCACAUAUGGCCAUUUGUCAAUUGAAUGAUGGGAAUAUGAAUUUAUGGCAUUAAAAUCUUUUGGUUUUUCGGCCGUUUGCAC-------- .(((.((((((((((((((.((((((....))))))((..(((......)))..))............)))))...........))))))))).)))........-------- ( -32.00) >DroAna_CAF1 11399 107 + 1 ------AGAAACCAUGUCACUGGCCACAUAUGGCCAUUUGUCAAUUGAAUGAUGGGAAUAUGAAUUUAUGGCAUUAAAAUCUUUUGGUUUUUCGGCCGUUUGGCCAUUUGGAC ------.....(((......(((((((((((..(((((..((....))..)))))..))))).....(((((...((((((....))))))...))))).))))))..))).. ( -32.60) >consensus ______AGAAACCAUGUCACUGGCCACAUAUGGCCAUUUGUCAAUUGAAUGAUGGGAAUAUGAAUUUAUGGCAUUAAAAUCUUUUGGUUUUUCGGCCGUUUGCAC________ ....................(((((.(((((..(((((..((....))..)))))..))))).............((((((....))))))..)))))............... (-12.36 = -12.92 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:46 2006