| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,469,674 – 14,469,794 |
| Length | 120 |
| Max. P | 0.771019 |
| Location | 14,469,674 – 14,469,794 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 97.06 |
| Mean single sequence MFE | -19.95 |
| Consensus MFE | -19.38 |
| Energy contribution | -19.25 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.97 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.771019 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14469674 120 + 22224390 CGAAAAUAAAUAAAUAAACAAGUUACCGGAAUGCAAAAGGCCAGAAAAAGAUGCUCGGAGUUGAGGGUAAGCGUUCCAAAAAGGAUAAUUACGUGCUUGAGCAGCAAGUAAAAAAAAAAA ...........................(((((((.......(.......).(((((........))))).)))))))...........((((.((((.....)))).))))......... ( -19.40) >DroSec_CAF1 342 117 + 1 CGAAAAUAAAUAAAUAAACAAGUUACCGGAAUGCAAAAGGCCAGAAAAAGAUGCUCGGAGUUGAGGGUAAGCGUUCCAAAAAGGAUAAUUACGUGCUUGAGCAGCAAGCAAAAA-A--AA ....................((((((((((((((.......(.......).(((((........))))).))))))).....)).)))))...((((((.....))))))....-.--.. ( -20.60) >DroSim_CAF1 6840 118 + 1 CGAAAAUAAAUAAAUAAACAAGUUACCGGAAUGCAAAAGGCCAGAAAAAGAUGCUCGGAGUUGAGGGUAAGCGUUCCAAAAAGGAUAAUUACGUGCUUGAGCAGCAAGCAAAAAAA--AA ....................((((((((((((((.......(.......).(((((........))))).))))))).....)).)))))...((((((.....))))))......--.. ( -20.60) >DroYak_CAF1 2928 118 + 1 CGAAAAUAAAUAAAUAAACAAGUUACCGGAAUGCAAAAGGCCAGAAAAAGAUGCUCGGAGUUGAGGGUAAGCAUUCAAAAAAGGAUAAUUACGUGCUUGAGCAGCAAGCAAAUAAA--AA ....................(((((((.((((((.......(.......).(((((........))))).))))))......)).)))))...((((((.....))))))......--.. ( -19.20) >consensus CGAAAAUAAAUAAAUAAACAAGUUACCGGAAUGCAAAAGGCCAGAAAAAGAUGCUCGGAGUUGAGGGUAAGCGUUCCAAAAAGGAUAAUUACGUGCUUGAGCAGCAAGCAAAAAAA__AA ....................((((((((((((((.......(.......).(((((........))))).))))))).....)).)))))...((((((.....)))))).......... (-19.38 = -19.25 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:12 2006