Locus 5606

Sequence ID X_DroMel_CAF1
Location 14,467,837 – 14,467,946
Length 109
Max. P 0.605657
window9103

overview

Window 3

Location 14,467,837 – 14,467,946
Length 109
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 83.38
Mean single sequence MFE -24.39
Consensus MFE -17.40
Energy contribution -18.52
Covariance contribution 1.11
Combinations/Pair 1.04
Mean z-score -1.80
Structure conservation index 0.71
SVM decision value 0.15
SVM RNA-class probability 0.605657
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14467837 109 + 22224390
CAUCAGUUGGCUUGGCGGAGGAGACUCAUCGUUUUCCCAUCGUCAUCAUCACAUCUUC--------ACAUCUCUCCAUCUAGCCACCUUUCACUUCCUCAAUGGA---CUGAGCAACUGC
...((((((...((((((.((((((.....))))))))...((.......))......--------...............))))...((((..(((.....)))---.)))))))))). ( -22.70)
>DroSim_CAF1 4527 109 + 1
CAUCAGUUGGCUUGGCGGAGGAGACUCAUCGUUUUCCCAUCGUCAUCAUCACAACUUC--------ACAUCUCUCCGUCUUGCCACCUUUCACUUCCUCGAUGGA---CCGAGCAACUGC
...((((((((..((((((((((((.....)))))......((.......))......--------......)))))))..)))............((((.....---.)))).))))). ( -26.80)
>DroYak_CAF1 1007 120 + 1
CAUCAGUUGAUUUGGCGCAGUUGACUCAUCGUUUUCCCAUCGUCAUCCUCACAUCUUUCCAGCUUGCCAUCUUUCCAUCUUGCCACCUUUCACUUGACCGAUGGACAACUGACCAACUGC
..(((((((...(((((.(((((....................................))))))))))....((((((....................)))))))))))))........ ( -23.67)
>consensus
CAUCAGUUGGCUUGGCGGAGGAGACUCAUCGUUUUCCCAUCGUCAUCAUCACAUCUUC________ACAUCUCUCCAUCUUGCCACCUUUCACUUCCUCGAUGGA___CUGAGCAACUGC
...((((((...((((((.((((((.....))))))...))))))............................((((((....................))))))........)))))). (-17.40 = -18.52 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:06 2006