Locus 5605

Sequence ID X_DroMel_CAF1
Location 14,462,970 – 14,463,066
Length 96
Max. P 0.605497
window9102

overview

Window 2

Location 14,462,970 – 14,463,066
Length 96
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 84.44
Mean single sequence MFE -31.67
Consensus MFE -23.82
Energy contribution -24.40
Covariance contribution 0.58
Combinations/Pair 1.00
Mean z-score -1.82
Structure conservation index 0.75
SVM decision value 0.15
SVM RNA-class probability 0.605497
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14462970 96 + 22224390
UUGAAUCCUUUUGUGUCCCCGGCCUGGGAAGCCGCUUCCUUCGGUUACCCUGUUCUGUUUGCCAUUUAUGGCACUUAAGCAAAUUAAUAAUAAGAU------------------------
.........(((((......(..(.(((.(((((.......))))).))).)..)....(((((....))))).....))))).............------------------------ ( -19.90)
>DroEre_CAF1 7617 120 + 1
UUGAAUCCUUUUGUGUCCCCGGGCUGGGAAGCCGCUUCCUUCGGUUUCCCUGUUCUGUUUGCCAUUUAUGGCACUUAAGCAAAUUAAUAAUAAGAUGCCACCAGAGGCCCAAAGUCGCAC
...........((((.(...((((((((((((((.......)))))))))...((((..(((((....))))).....(((..(((....)))..)))...)))))))))...).)))). ( -38.50)
>DroYak_CAF1 8777 120 + 1
UUGAAUCCUUUUGUGUCCACGGCCUGGGAAGCCGCUUCCUUCGGUUUCCCUGUACUGUUUGCCAUUUAUGGCACUUAAGCAAAUUAAUAAUAAGAUGCCACCAGAGGCCCAAAGUCGCAC
...........((((.(...((((((((((((((.......)))))))))....(((..(((((....))))).....(((..(((....)))..)))...))))))))....).)))). ( -36.60)
>consensus
UUGAAUCCUUUUGUGUCCCCGGCCUGGGAAGCCGCUUCCUUCGGUUUCCCUGUUCUGUUUGCCAUUUAUGGCACUUAAGCAAAUUAAUAAUAAGAUGCCACCAGAGGCCCAAAGUCGCAC
.........(((((......(..(.(((((((((.......))))))))).)..)....(((((....))))).....))))).............(((......)))............ (-23.82 = -24.40 +   0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:05 2006