Locus 5604

Sequence ID X_DroMel_CAF1
Location 14,461,695 – 14,461,807
Length 112
Max. P 0.954504
window9101

overview

Window 1

Location 14,461,695 – 14,461,807
Length 112
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 92.76
Mean single sequence MFE -38.47
Consensus MFE -33.57
Energy contribution -33.80
Covariance contribution 0.23
Combinations/Pair 1.07
Mean z-score -3.11
Structure conservation index 0.87
SVM decision value 1.44
SVM RNA-class probability 0.954504
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14461695 112 - 22224390
GCAA-------GGCUGCAAGGCCCCCGA-AAAAGGCGAGAAAAAUGUUAAACAAAACAUAUUGCCGCAAUUGGAGGCCAUGUGCGGUGCGGCAAGUGCUGGCUGACAUUUCAACACCACG
((..-------.((((((.((((.((((-....(((((.....(((((......))))).)))))....)))).))))...))))))...))..(((.((..(((....))).)).))). ( -37.90)
>DroEre_CAF1 6391 118 - 1
GCAACAAAUGCAACUGCAAGGCCCCGA--AAAAGGCGAGAAAAAUGUUAAACAAAACAUAUUGCCGCAAUUGGAGGCCAUGUGCGGUGCGGCAAGUGCUGGCUGACAUUUCAACACCACG
........(((.((((((.((((((((--....(((((.....(((((......))))).)))))....)))).))))...))))))...))).(((.((..(((....))).)).))). ( -38.80)
>DroYak_CAF1 7510 120 - 1
GCAACAAAUGCAACUGCAAGGCCCCCAAAAAAAGGCGAGAAAAAUGUUAAACAAAACAUAUUGCCGCAAUUGGAGGCCAUGUGCGGUGCGGCAAGUGCUGGCUGACAUUUCAACACCACG
........(((.((((((.((((.((((.....(((((.....(((((......))))).)))))....)))).))))...))))))...))).(((.((..(((....))).)).))). ( -38.70)
>consensus
GCAACAAAUGCAACUGCAAGGCCCCCAA_AAAAGGCGAGAAAAAUGUUAAACAAAACAUAUUGCCGCAAUUGGAGGCCAUGUGCGGUGCGGCAAGUGCUGGCUGACAUUUCAACACCACG
((..........((((((.((((.((((.....(((((.....(((((......))))).)))))....)))).))))...)))))).((((....)))))).................. (-33.57 = -33.80 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:04 2006