| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,461,037 – 14,461,157 |
| Length | 120 |
| Max. P | 0.855460 |
| Location | 14,461,037 – 14,461,157 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 91.94 |
| Mean single sequence MFE | -24.17 |
| Consensus MFE | -22.53 |
| Energy contribution | -22.53 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.855460 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14461037 120 - 22224390 CACACGCCCACCAGCUACAGAUACAGAUACAUGUGCCUAUUUCAACACCAGAAACUCCAGCAGCACACUCAAUUGAGUUUGCUUUGUCUGCGAUCUCAAGUUGUCCAAACUAAUUAAUGA ...........(((((..((((.((((((..(((.....((((.......)))).....)))(((.((((....)))).)))..))))))..))))..)))))................. ( -22.90) >DroEre_CAF1 5917 117 - 1 NCCAAGCCCGCCAGCUACAGAUACAGAUACAUAUGCUCAUUUCAACAUUGGAAACU---GCAGCACACUCAAUUGAGUUUGCUUUGUCUGCGAUCUCAAGUUGUCCAAACUAAUUAAUGA ...........(((((..((((.((((((....(((...(((((....)))))...---)))(((.((((....)))).)))..))))))..))))..)))))................. ( -25.30) >DroYak_CAF1 6914 120 - 1 UACACACCCACCAGCUACAGAUACAGAUACAUAUGCUUAUUUCAACACCAGAAACUCCAGCAGCACACUCAAUUGAGUUUGCUUUGUCUGCGAUCUCAAGUUGUCCAAACUAAUUAAUGA ...........(((((..((((.((((((....((((..((((.......))))....))))(((.((((....)))).)))..))))))..))))..)))))................. ( -24.30) >consensus _ACACGCCCACCAGCUACAGAUACAGAUACAUAUGCUUAUUUCAACACCAGAAACUCCAGCAGCACACUCAAUUGAGUUUGCUUUGUCUGCGAUCUCAAGUUGUCCAAACUAAUUAAUGA ...........(((((..((((.((((((....(((...((((.......)))).....)))(((.((((....)))).)))..))))))..))))..)))))................. (-22.53 = -22.53 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:03 2006