Locus 5602

Sequence ID X_DroMel_CAF1
Location 14,460,593 – 14,460,749
Length 156
Max. P 0.864296
window9098 window9099

overview

Window 8

Location 14,460,593 – 14,460,713
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 83.94
Mean single sequence MFE -22.63
Consensus MFE -14.69
Energy contribution -15.47
Covariance contribution 0.78
Combinations/Pair 1.05
Mean z-score -2.40
Structure conservation index 0.65
SVM decision value 0.50
SVM RNA-class probability 0.760705
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14460593 120 + 22224390
UUUCCUAAUUAAGUCGCCCAGCCAAAAAAAAAAAAAAACACACACACGCACUCAUUCGCCUGCAAAGUGGGCCCGAAAUAAAAUCAUUUAACAAAAUAAGUUAAGUGAACGGGGACUCUA
...........((((.(((......................................(((..(...)..)))...........(((((((((.......)))))))))..)))))))... ( -24.60)
>DroEre_CAF1 5491 107 + 1
UUUCCUAAUUAAGUGGCCCAGCCAAAAAA-----CACGC--------ACACUCAUUCGCCUGGAAAGUGGCCCCAAAAUAAAAUCAUUUAACAAAAUAAGUUAAGUGAACGGGGAUGCUA
...........(((..(((.((((.....-----((.((--------..........)).)).....))))............(((((((((.......)))))))))...)))..))). ( -24.00)
>DroYak_CAF1 6461 115 + 1
UUUCCUAAUUAAGUCGCCCAGUCAAAAAA-----CACACACACACACACACUUAUUUGCCUGAAAAGUGGGCCCAAAAUAAAAUCAUUUAACAAAAUAAGUUAAGUGCACGGGGAUUAUA
...........((((.(((..........-----.................((((((((((.......))))...))))))...((((((((.......))))))))...)))))))... ( -19.30)
>consensus
UUUCCUAAUUAAGUCGCCCAGCCAAAAAA_____CACACACACACACACACUCAUUCGCCUGAAAAGUGGGCCCAAAAUAAAAUCAUUUAACAAAAUAAGUUAAGUGAACGGGGAUUCUA
............(((.(((......................................((((.......))))...........(((((((((.......)))))))))..)))))).... (-14.69 = -15.47 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 9

Location 14,460,633 – 14,460,749
Length 116
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 85.11
Mean single sequence MFE -27.75
Consensus MFE -22.60
Energy contribution -22.60
Covariance contribution 0.00
Combinations/Pair 1.08
Mean z-score -2.24
Structure conservation index 0.81
SVM decision value 0.84
SVM RNA-class probability 0.864296
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14460633 116 + 22224390
CACACACGCACUCAUUCGCCUGCAAAGUGGGCCCGAAAUAAAAUCAUUUAACAAAAUAAGUUAAGUGAACGGGGACUCUAAAUGGCAGGCACUAUUCACUAAAGAUUGUGAUCUAA----
.................((((((....((((((((........(((((((((.......))))))))).))))...))))....)))))).....((((........)))).....---- ( -30.10)
>DroEre_CAF1 5525 113 + 1
-------ACACUCAUUCGCCUGGAAAGUGGCCCCAAAAUAAAAUCAUUUAACAAAAUAAGUUAAGUGAACGGGGAUGCUAAAUGGCGGGCACUAUUCACUAAAGAGUGUGAUGUAUAGUG
-------.......((((((.....(((..((((.........(((((((((.......)))))))))..))))..)))....))))))((((((((((........))))...)))))) ( -31.00)
>DroYak_CAF1 6496 116 + 1
CACACACACACUUAUUUGCCUGAAAAGUGGGCCCAAAAUAAAAUCAUUUAACAAAAUAAGUUAAGUGCACGGGGAUUAUAAAUGGCAGGCACUAUUCACUAAAGAUUGUGAUGCAU----
................((((((....((((.(((..........((((((((.......))))))))....))).))))......))))))....((((........)))).....---- ( -22.14)
>consensus
CACACACACACUCAUUCGCCUGAAAAGUGGGCCCAAAAUAAAAUCAUUUAACAAAAUAAGUUAAGUGAACGGGGAUUCUAAAUGGCAGGCACUAUUCACUAAAGAUUGUGAUGUAU____
.................(((((.....(((((((.........(((((((((.......)))))))))...)))..)))).....))))).....((((........))))......... (-22.60 = -22.60 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:02 2006