| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,454,355 – 14,454,475 |
| Length | 120 |
| Max. P | 0.872025 |
| Location | 14,454,355 – 14,454,475 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 83.57 |
| Mean single sequence MFE | -42.07 |
| Consensus MFE | -27.74 |
| Energy contribution | -28.85 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.59 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.872025 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14454355 120 + 22224390 AACACACUCGAAGGUCGCCUGGGGAUGGUUUGGCCAAAGGGUGGCGGCCACAGGGGGCUAAAGGGCUGCCCAAAAAAGGGGGCCUAAGGGGCCUCGAAUGGGGCACCAAAGGGGCUCUUA ............(((((((......(((.....)))......)))))))...(((((((....((.(((((......((((.((....)).)))).....))))))).....))))))). ( -49.80) >DroSim_CAF1 164 104 + 1 AACACACUCGAAGGUCGCCUGGGGAUGGGUUGGCCAAAGGGUG---GCCACAGGGGGCUAAAGGGGUGCC--AAAAAGGGGGCCUAAAGG-----------GGCUCCAAAGGGGAUACAA ....(((((...((((((((......))).)))))...)))))---.((....((((((....((((.((--......)).)))).....-----------))))))....))....... ( -40.10) >DroYak_CAF1 474 105 + 1 AACACACUCGAAGGUCGCCUGGGGAUGGGCUGGCCAAAGGGUG---GCCACAGGGGGCUAAAGGGGUGCC--AAAAAGGGGGCCUAAA----------UGGGGAUCCAAAGGGGUUACAA ....(((((...((((((((......)))).))))...)))))---(((......))).....((((.((--......)).))))...----------((..(((((....))))).)). ( -36.30) >consensus AACACACUCGAAGGUCGCCUGGGGAUGGGUUGGCCAAAGGGUG___GCCACAGGGGGCUAAAGGGGUGCC__AAAAAGGGGGCCUAAAGG________UGGGGCUCCAAAGGGGAUACAA ....(((((...((((((((......)))).))))...)))))....((....((((((....((((.((........)).))))................))))))....))....... (-27.74 = -28.85 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:55 2006