Locus 5596

Sequence ID X_DroMel_CAF1
Location 14,452,650 – 14,452,755
Length 105
Max. P 0.845934
window9088

overview

Window 8

Location 14,452,650 – 14,452,755
Length 105
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 78.14
Mean single sequence MFE -21.38
Consensus MFE -13.49
Energy contribution -13.68
Covariance contribution 0.19
Combinations/Pair 1.18
Mean z-score -1.96
Structure conservation index 0.63
SVM decision value 0.77
SVM RNA-class probability 0.845934
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14452650 105 + 22224390
UUAUUCACACAAAUUCCUCGUUGCGUAAGAUUAAAGUGCUUACUAUUUUUAAGUCAACGCCUUAAAGGCC------UUGAU--AUUUGCAGCUUUUGAAUAAUAAAAUU------CAAA-
...................((((((((((((....)).))))).........(((((.(((.....))).------)))))--....))))).(((((((......)))------))))- ( -22.30)
>DroSec_CAF1 13698 105 + 1
GUAUUCACACAAAUUCCUCGUUGCGUAAGAUUAAAGUGCUUACUAUUUUUAAGUCAACGCCUUAAAGGCC------UUGAU--AUCUGCAACUCCUGAAUAAUAAAAUU------CAAA-
...................((((((((((((....)).))))).........(((((.(((.....))).------)))))--....)))))...(((((......)))------))..- ( -21.20)
>DroEre_CAF1 14626 114 + 1
UUAUGCAUCUAAAUUCCUUUUUGCGUGAGUCUAAAAUGUCUCAUAUUUUUAAGUCAACGGCUUGAAGCCUCUGUGUUUUAGCUAUUUGCAGCUUCUGAAUAAUAAAAUU------CAAAU
...((((.(((((.........(((((((.(......).)))))...(((((((.....)))))))))........))))).....)))).....(((((......)))------))... ( -19.63)
>DroYak_CAF1 12618 108 + 1
UCAUG----UAAAUUCUUUGUUGCGUUAGCUUAAAGUGUUUAAUAUUUUUAAGUCAACGCCUUAAAGGCC------UUUAG--AUUUGCAGCUUCUGAAUAAUAAAAUUCAAAUUCAAAU
...((----(((((((((((..(((((..(((((((..........)))))))..)))))..)))))...------....)--))))))).....(((((......)))))......... ( -22.41)
>consensus
UUAUGCACACAAAUUCCUCGUUGCGUAAGAUUAAAGUGCUUAAUAUUUUUAAGUCAACGCCUUAAAGGCC______UUGAG__AUUUGCAGCUUCUGAAUAAUAAAAUU______CAAA_
............((((...(((((((..((((((((..........))))))))..))(((.....)))..................)))))....)))).................... (-13.49 = -13.68 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:52 2006