Locus 5595

Sequence ID X_DroMel_CAF1
Location 14,450,052 – 14,450,151
Length 99
Max. P 0.658564
window9087

overview

Window 7

Location 14,450,052 – 14,450,151
Length 99
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 81.28
Mean single sequence MFE -25.77
Consensus MFE -18.70
Energy contribution -18.32
Covariance contribution -0.38
Combinations/Pair 1.24
Mean z-score -1.46
Structure conservation index 0.73
SVM decision value 0.26
SVM RNA-class probability 0.658564
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14450052 99 - 22224390
GA--CAAAGCCGCCCAAUUUGAAUUAUGACAUUUUGCAUGCGAGCCGACAUUUAAAGCUGUGCAAAUUGUUCGAGCGUCAAAUUGGCGCUGCCAUUUCACC
((--....((.(((((((((((.....((((.(((((((((...............)).))))))).))))......))))))))).)).))....))... ( -28.76)
>DroVir_CAF1 11224 99 - 1
AGAGUGUAGC--CGGAAUUUGAAUUAUGACAUUUUGCAUACGAGUUGACAUUUAAAGCUGUGCAAAUUGUUCGAGCGUCAAAUUGGCGCUGCCAUUUCGUA
.(((.(((((--...(((((((.....((((.((((((((.(..((((...))))..))))))))).))))......)))))))...)))))...)))... ( -25.40)
>DroGri_CAF1 13814 90 - 1
A-----------CGGGAUUUGAAUUAUGACAUUUUGCAUGCGAGUCGACAUUUAAAGCUGUGCAAAUUGUUCGAGCGUCAAAUUGGCACUGCCAUCAGCCA
.-----------.(((((((((.....((((.(((((((((...............)).))))))).))))......)))))))(((...))).....)). ( -22.26)
>DroWil_CAF1 12054 97 - 1
GC--CAAAA--ACCCAAUUUGAAUUAUGACAUUUUGCAUGCGAGUUGACAUUUAAAGCUGUGCAAAUUGUUCGAGCGUCAAAUUGGCGCUGCCAUUUUGGG
..--.....--.(((((..((......((((.(((((((((...((((...)))).)).))))))).))))..((((((.....))))))..))..))))) ( -28.90)
>DroMoj_CAF1 13931 88 - 1
AG-------------AAUUUGAAUUAUGACAUUUUGCAUGCGAGCUGACAUUUAAAGCUGUGCAAAUUGUUCGAGCGUCAAAUUGGCGCUGCCAUUCUCAA
((-------------(((.........((((.(((((((...((((.........))))))))))).))))..((((((.....))))))...)))))... ( -23.50)
>DroAna_CAF1 14096 97 - 1
AG--C--UGCCGCCCCGUUUGAAUUAUGACGCUUUGCAUGCUGGUUGACACUUAAAGCUGUGCAAAUUGUUGGAGCGUCAAAUUGGCGCUGUCAUUUAGCC
..--.--....(((..((((((....(((((.((((((((((.............))).))))))).))))).....)))))).)))((((.....)))). ( -25.82)
>consensus
AG__C__AG___CCCAAUUUGAAUUAUGACAUUUUGCAUGCGAGUUGACAUUUAAAGCUGUGCAAAUUGUUCGAGCGUCAAAUUGGCGCUGCCAUUUCGCA
...............(((((((.....((((.(((((((...((((.........))))))))))).))))......)))))))(((...)))........ (-18.70 = -18.32 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:51 2006