Locus 5593

Sequence ID X_DroMel_CAF1
Location 14,445,867 – 14,445,983
Length 116
Max. P 0.796832
window9085

overview

Window 5

Location 14,445,867 – 14,445,983
Length 116
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 80.54
Mean single sequence MFE -23.68
Consensus MFE -11.88
Energy contribution -11.75
Covariance contribution -0.12
Combinations/Pair 1.30
Mean z-score -2.72
Structure conservation index 0.50
SVM decision value 0.60
SVM RNA-class probability 0.796832
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14445867 116 - 22224390
AAAAAUACAUCUAAUAUUUCAUGUUACAUAUUCUUAAUGCAUUUAAUUUUAAGCAUUAUUUCUUUCUGCCACCAAAUCCUAAUGGGUUAAAUGC----CAUAAGUGUGUGUAUUCAGAAC
.................(((.((.(((((((.((((..(((((((((.....(((..(.....)..)))..(((........))))))))))))----..)))).)))))))..))))). ( -21.50)
>DroSec_CAF1 6985 116 - 1
GAAAAUACAUAGAUUAUUUCAUGUUAAAUAUUCUAAAUGCAUUUAAUUUCAAGAAAUAUUUCUUUCUGCCACCAAAUCCUAAUGGGUUAAAUGC----CAUAGAUGUGUAUAUUCAGAAC
(((.(((((((((.....))...........((((...(((((((((....(((((......)))))....(((........))))))))))))----..))))))))))).)))..... ( -22.30)
>DroEre_CAF1 8043 112 - 1
GAAAAUACAACUAAUAUUUCAUGUAAAUUGCUCUGAAGACAUUUAAAUUCAAGAAAUAUUUCCUUCUGG---CAAACCCUAAUGGGUUAAAUGC----CA-AAAGUUGUGUAUUCAGAAC
(((.((((((((((((((((.((.....((.((....))))........)).))))))))......(((---(((((((....)))))...)))----))-..)))))))).)))..... ( -29.12)
>DroYak_CAF1 5788 116 - 1
GAAAACACAACAAAUAUAUCAUGUAAAAUAUUCCAAAGACAUUUAAAUUCAAGAAAUAUUUCUUUCUGA---CAAACCCUAAUGGGUUAAAUGUGUGGUU-AAGUGUGUGUAUUCCGAAC
(((.(((((.((.....((((..((.......................(((.((((......)))))))---..(((((....)))))...))..)))).-...))))))).)))..... ( -21.80)
>consensus
GAAAAUACAACUAAUAUUUCAUGUAAAAUAUUCUAAAGACAUUUAAAUUCAAGAAAUAUUUCUUUCUGC___CAAACCCUAAUGGGUUAAAUGC____CA_AAAUGUGUGUAUUCAGAAC
(((.(((((((...........((.....)).......((((((.......((((........)))).......(((((....)))))))))))..........))))))).)))..... (-11.88 = -11.75 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:49 2006