Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,437,032 – 14,437,153 |
Length | 121 |
Max. P | 0.969458 |
Location | 14,437,032 – 14,437,131 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 94.86 |
Mean single sequence MFE | -21.19 |
Consensus MFE | -20.34 |
Energy contribution | -20.12 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -2.49 |
Structure conservation index | 0.96 |
SVM decision value | 1.64 |
SVM RNA-class probability | 0.969458 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14437032 99 + 22224390 CGAAAAGAUAGGUUGCAACUUCAAGGGUGUUAAAAGGUGAUUCAUAUGCAACAACAA-----AUAAUAAAUUGUUGUGUAAAAGUCAAAAACACCUGCCGAUUA ..........(((...........(((((((......(((((..((((((((((...-----........))))))))))..)))))..))))))))))..... ( -20.70) >DroSec_CAF1 16250 103 + 1 CGAA-AGAUAGGUUGAAACUUCAAGGGUGUUAAAAGGUGAUUCAUAUGCAAUAACAAAAUAUAUAAUAAAUUGUUGUGUAAAAGUCAAAAACACCUGCCGAUUA (...-.)...((((((....))).(((((((......(((((..((((((((((................))))))))))..)))))..))))))))))..... ( -20.49) >DroSim_CAF1 27325 103 + 1 CGAA-AGAUAGGUUGAAACUUCAAGGGUGUUAAAAGGUGAUUCAUAUGCAACAACAAAAUAUAUAAUAAAUUGUUGUGUAAAAGUCAAAAACACCUGCCGAUUA (...-.)...((((((....))).(((((((......(((((..((((((((((................))))))))))..)))))..))))))))))..... ( -22.39) >consensus CGAA_AGAUAGGUUGAAACUUCAAGGGUGUUAAAAGGUGAUUCAUAUGCAACAACAAAAUAUAUAAUAAAUUGUUGUGUAAAAGUCAAAAACACCUGCCGAUUA ..........(((((......)).(((((((......(((((..((((((((((................))))))))))..)))))..))))))))))..... (-20.34 = -20.12 + -0.22)
Location | 14,437,057 – 14,437,153 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 93.40 |
Mean single sequence MFE | -19.96 |
Consensus MFE | -18.54 |
Energy contribution | -18.66 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -2.34 |
Structure conservation index | 0.93 |
SVM decision value | 1.23 |
SVM RNA-class probability | 0.933740 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14437057 96 + 22224390 GGUGUUAAAAGGUGAUUCAUAUGCAACAACAA-----AUAAUAAAUUGUUGUGUAAAAGUCAAAAACACCUGCCGAUUAAUAAUAAUAAUGGAAACUUGGG ((((((......(((((..((((((((((...-----........))))))))))..)))))..))))))..(((((((....))))...(....).))). ( -19.80) >DroSec_CAF1 16274 101 + 1 GGUGUUAAAAGGUGAUUCAUAUGCAAUAACAAAAUAUAUAAUAAAUUGUUGUGUAAAAGUCAAAAACACCUGCCGAUUAAUAAUAAUAAUGGGAGCUUGUU ((((((......(((((..((((((((((................))))))))))..)))))..))))))..((.((((.......)))).))........ ( -19.09) >DroSim_CAF1 27349 101 + 1 GGUGUUAAAAGGUGAUUCAUAUGCAACAACAAAAUAUAUAAUAAAUUGUUGUGUAAAAGUCAAAAACACCUGCCGAUUAAUAAUAAUAAUGGGAGCUUGUU ((((((......(((((..((((((((((................))))))))))..)))))..))))))..((.((((.......)))).))........ ( -20.99) >consensus GGUGUUAAAAGGUGAUUCAUAUGCAACAACAAAAUAUAUAAUAAAUUGUUGUGUAAAAGUCAAAAACACCUGCCGAUUAAUAAUAAUAAUGGGAGCUUGUU ((((((......(((((..((((((((((................))))))))))..)))))..))))))..((.((((.......)))).))........ (-18.54 = -18.66 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:48 2006