Locus 5588

Sequence ID X_DroMel_CAF1
Location 14,430,919 – 14,431,016
Length 97
Max. P 0.947152
window9072

overview

Window 2

Location 14,430,919 – 14,431,016
Length 97
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 76.93
Mean single sequence MFE -28.93
Consensus MFE -21.72
Energy contribution -20.84
Covariance contribution -0.88
Combinations/Pair 1.38
Mean z-score -1.81
Structure conservation index 0.75
SVM decision value 1.37
SVM RNA-class probability 0.947152
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14430919 97 + 22224390
AAAAGCAUGUGGGUGGCAGUGGGUGGCUGCAGGGCGUGUCGCCAAUUUGCAAUGUUCACAAAGUG---------GUGCAC-----AUAAUAAAACAC---------GGAGGGAAAUUCAU
............(((((((..(((((((((...))).))))))...)))).((((.(((......---------))).))-----)).......)))---------(((......))).. ( -24.00)
>DroSec_CAF1 10239 97 + 1
AAAAGCAAGUGGGUGGCAGUGGGUGGCAGCAGGGCGUGUCGCCAAUUUGCAAUAUCCACAAAGUG---------GUGCAC-----AGAAUAAAACAC---------AGAGGGAAAUUCAU
........(((((((((((..(((((((((...)).)))))))...))))..)))))))...(((---------......-----.........)))---------.(((.....))).. ( -26.16)
>DroSim_CAF1 21542 106 + 1
AAAAGCAAGUGGGUGGCAGUGGGUGGCAGCAGGGCGUGUCGCCAAUUUGCAAUAUCCACAAAGUG---------GUGCAC-----AGAAUAAAACAGAGUGAAAAAAGAAGGAAAUUCAU
....((..(((((((((((..(((((((((...)).)))))))...))))..)))))))...(((---------...)))-----.............)).......(((.....))).. ( -25.80)
>DroEre_CAF1 9957 96 + 1
AACGGCAAGUGGGUGGCAGUGGGUGGCAGUAGGGCGUGUCGCCAUUUUGCAACGCCCGCAACUC----------GCGCAC-----CGUAAAAAACAC---------AGAGGAAAAUUCAU
.((((...((((((....(((((((((((...((((...))))...))))..))))))).))))----------))...)-----))).........---------.(((.....))).. ( -34.70)
>DroYak_CAF1 10126 111 + 1
AGAAGCAAGUGGGUAGCAGUGGGUGGCAGAAGAGCGUGUCGCCCAUUCGCAAUACCCUCAAAGUGUUGCAGAGUGUGCAAAGUGGUGCAAAAAACAA---------AGGAGAAAAUUCUU
....(((.(.((((((((((((((((((........))))))))))).))..))))).)......(((((.....))))).....)))........(---------((((.....))))) ( -34.00)
>consensus
AAAAGCAAGUGGGUGGCAGUGGGUGGCAGCAGGGCGUGUCGCCAAUUUGCAAUAUCCACAAAGUG_________GUGCAC_____AGAAUAAAACAC_________AGAGGGAAAUUCAU
........(((((((((((..(((((((........)))))))...))))..)))))))................................................(((.....))).. (-21.72 = -20.84 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:38 2006