Locus 5586

Sequence ID X_DroMel_CAF1
Location 14,429,908 – 14,430,025
Length 117
Max. P 0.984841
window9069

overview

Window 9

Location 14,429,908 – 14,430,025
Length 117
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 92.42
Mean single sequence MFE -35.42
Consensus MFE -31.82
Energy contribution -31.22
Covariance contribution -0.60
Combinations/Pair 1.14
Mean z-score -1.75
Structure conservation index 0.90
SVM decision value 1.99
SVM RNA-class probability 0.984841
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14429908 117 - 22224390
UGGUUUAUUUCGGGCGCAUUUGUGGCUCGCGUGUCAGUCGAGGGUUAAGCAAACACUUGUAGCCAAGUUCUUUGAUUGAUUCGUUGAGAAUGGAGGGGAUCGAAAUGGAAGCCGCAG
.(((((((((((..(.(.((..(..((((((.((((((((((((((.....)))(((((....))))).))))))))))).)).)))).)..)).).)..)))))))..)))).... ( -37.80)
>DroSec_CAF1 9242 111 - 1
UGGUUUAUUUCGGGAGCAUUUGUGGCUCGCGUGUCAGUCGAGGGUUAAGCAAACACUUGUAACCAAGUUCUUUGAUUGAUUCGUUGCGAAUGGAGGGGCUCGGAAUGGAAG------
...(((((((((((....((..(.((..(((.((((((((((((((.....)))(((((....))))).))))))))))).))).))..)..))....)))))))))))..------ ( -35.00)
>DroSim_CAF1 9244 111 - 1
UGGUUUAUUUCGGGAGCAUUUGUGGCUCGCGUGUCAGUCGAGGGUUAAGCAAACACUUGUAACCAAGUUCUUUGAUUGAUUCGUUGCGAAUGGAGGGGCUCGGGAUGGAAG------
...(((((..((((....((..(.((..(((.((((((((((((((.....)))(((((....))))).))))))))))).))).))..)..))....))))..)))))..------ ( -34.80)
>DroEre_CAF1 8956 110 - 1
UGGUUUAUUUCGGGAGCAUUUGCGGCUCGCGUGUCAGUCGAGGGUUAAGCAAACACUUGUAACCAAGUUCCUUGAUUGAUUCGUUGAGUAUGGAG-GGAUCGGAAUGGAAA------
...((((((((((..((....)).(((((((.((((((((((((((.....)))(((((....))))).))))))))))).)).)))))......-...))))))))))..------ ( -36.00)
>DroYak_CAF1 9113 111 - 1
UGGUUUAUUUCGGGAGCAUUUGCGGCUCGCGUGUCAGUCGAGGGUUAAGCAAACACUUGUAACCAAGUUCUUUGAUUGACUCGUUGAGUAUGGAGGGGAUUGGAAUGGAAA------
...((((((((((..((....)).(((((((.((((((((((((((.....)))(((((....))))).))))))))))).)).)))))..........))))))))))..------ ( -33.50)
>consensus
UGGUUUAUUUCGGGAGCAUUUGUGGCUCGCGUGUCAGUCGAGGGUUAAGCAAACACUUGUAACCAAGUUCUUUGAUUGAUUCGUUGAGAAUGGAGGGGAUCGGAAUGGAAG______
...((((((((((((((.......))))(((.((((((((((((((.....)))(((((....))))).))))))))))).)))...............))))))))))........ (-31.82 = -31.22 +  -0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:35 2006