Locus 5583

Sequence ID X_DroMel_CAF1
Location 14,424,774 – 14,424,864
Length 90
Max. P 0.853011
window9059

overview

Window 9

Location 14,424,774 – 14,424,864
Length 90
Sequences 3
Columns 95
Reading direction reverse
Mean pairwise identity 81.29
Mean single sequence MFE -25.10
Consensus MFE -21.75
Energy contribution -21.87
Covariance contribution 0.11
Combinations/Pair 1.05
Mean z-score -1.53
Structure conservation index 0.87
SVM decision value 0.80
SVM RNA-class probability 0.853011
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14424774 90 - 22224390
CUCGAGAGAAGGUAACGAUUGCCUCAGUGCAGCAGGACCAGAAUCGUGUACUCGAAAUGGUCAGGUUGUUAGGAUAGGACAU-----UAAUGCUA
.((....)).((((.....((((((...(((((..(((((...(((......)))..)))))..)))))...))..)).)).-----...)))). ( -23.80)
>DroSec_CAF1 4266 73 - 1
CUCGAGAGAAGGUAACGAUCGCCUCAGUGCAACCGGACCAGAAUCGUGUACACGAAAUGGUCAGGUUGUU--GAU--------------------
.((....)).(((.......)))(((..((((((.(((((...((((....))))..))))).)))))))--)).-------------------- ( -24.50)
>DroSim_CAF1 4225 93 - 1
CUCGAGAGAAGGUAACGAUCGCCUCAGUGCAGCCGGACCAGAAUCGUGUACACGAAAUGGUCAGGUUGUU--GAUAGGACAUGCUUAUAAUGCUA
.((....))(((((.......(((....((((((.(((((...((((....))))..))))).)))))).--...)))...)))))......... ( -27.00)
>consensus
CUCGAGAGAAGGUAACGAUCGCCUCAGUGCAGCCGGACCAGAAUCGUGUACACGAAAUGGUCAGGUUGUU__GAUAGGACAU_____UAAUGCUA
.((....)).(((.......)))((...((((((.(((((...(((......)))..))))).))))))...))..................... (-21.75 = -21.87 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:27 2006