| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,419,903 – 14,419,993 |
| Length | 90 |
| Max. P | 0.516693 |
| Location | 14,419,903 – 14,419,993 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 96.14 |
| Mean single sequence MFE | -16.74 |
| Consensus MFE | -16.04 |
| Energy contribution | -15.88 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.96 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.516693 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14419903 90 - 22224390 UGUAUCUUUAUGUAGCGCGCAUAGGCCAAGUUGCAUAGUCGAUACGUACGUACGUUUAUACAACAACAAAGCAAAUCUAUAUAUAUACAU (((((...(((((((.((((....))...((((.((((.((.(((....))))).)))).))))......))....))))))).))))). ( -17.90) >DroSec_CAF1 2248 87 - 1 UGUAUCCUUAUGUAGCGCGCAUAGGCCAAGUUGCAUAGUCGAUACGUACGUACGUUUAUACAA-AACAAAGCAAAUCUAUA--UAUACAU .(((((.(((((((((..((....))...)))))))))..)))))........((((.....)-)))..............--....... ( -16.60) >DroSim_CAF1 2278 87 - 1 UGUAUCCUUAUGUAGCGCGCAUAGGCCAAGUUGCAUAGUCGAUACGUACGUACGUUUAUACAA-AACAAAGCAAAUCUAUA--UAUACAU .(((((.(((((((((..((....))...)))))))))..)))))........((((.....)-)))..............--....... ( -16.60) >DroEre_CAF1 2411 86 - 1 UGUAUCUUUAUGUAGCGCGUAUAGGCCAAGUUGCAUAGUUGAUACGUACGUACGUUUAUACAA--ACAAAGCAAAUCUAUA--UAUACAU .(((((.(((((((((((......))...)))))))))..)))))........((((....))--))..............--....... ( -15.50) >DroYak_CAF1 2214 86 - 1 UGUAUCUUUAUGUAGCGCGCAUAGGCCAAGUUGCAUAGUUGAUACGUACGUACGUUUAUACAA--ACAAAGCAAAUCUAUA--UAUACAU .(((((.(((((((((..((....))...)))))))))..)))))........((((....))--))..............--....... ( -17.10) >consensus UGUAUCUUUAUGUAGCGCGCAUAGGCCAAGUUGCAUAGUCGAUACGUACGUACGUUUAUACAA_AACAAAGCAAAUCUAUA__UAUACAU .(((((.(((((((((..((....))...)))))))))..)))))....(((......)))............................. (-16.04 = -15.88 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:23 2006