| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,412,467 – 14,412,567 |
| Length | 100 |
| Max. P | 0.997276 |
| Location | 14,412,467 – 14,412,567 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 74.36 |
| Mean single sequence MFE | -33.38 |
| Consensus MFE | -20.56 |
| Energy contribution | -20.76 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.62 |
| SVM decision value | 2.83 |
| SVM RNA-class probability | 0.997276 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14412467 100 + 22224390 GUGUCCAUUUUGCAAUUUGCCGCCGGCGCGGUGAACGCAAGGCAAAAAUUGUUAAAAGACCAAAGGA-------------------CGAGGGGGAAGUGGCUUCAAAGUGGGCGGAAAA .(((((((((((..((((.(((((...(((.....)))..))).....(((((............))-------------------)))..)).)))).....)))))))))))..... ( -29.00) >DroSec_CAF1 122257 82 + 1 GUGUCCAUUUUGCAAUUUGCCGCCGGCGCGGUGAACGCAAGGCAAAAAUUGUUAAAAGACCAAAGGG---------------------------A---------AAAGUGGGCGGAA-G .(((((((((((((((((...(((...(((.....)))..)))..))))))).......((....))---------------------------.---------))))))))))...-. ( -26.10) >DroSim_CAF1 115462 82 + 1 GUGUCCAUUUUGCAAUUUGCCGCCGGCGCGGUGAACGCAAGGCAAAAAUUGUUAAAAGACCAAAGGG---------------------------A---------AAAGUGGGCGGAA-G .(((((((((((((((((...(((...(((.....)))..)))..))))))).......((....))---------------------------.---------))))))))))...-. ( -26.10) >DroEre_CAF1 107024 114 + 1 GUGUCCAUUUUGCAAUUUGCCGCCGGCGCGAUGAACGCCAGGCAA-AAUGGUUAAAAGACCAA---GGGGUGGAGCUGCAGAGGGGCGCGGGGGAAGUGGCUUGCAAGUGGGCGGCA-A ((((((.(((((((.((..(((((((((.......)))).)))..-..(((((....))))).---..))..))..))))))))))))).......((.(((((....))))).)).-. ( -47.80) >DroYak_CAF1 123497 112 + 1 GUGUCCAUUUUGCAAUUUGCCGCCGGCGCGGUGAACGCAAGGCAA-AAUGGUUAAAAGGCCAAAAGGGGGUGGUGGUGCAGAG-----CGGGAGAAGUGGCUUGAAAGUGGGCGGCA-A .(((((((((((((..(..(((((...(((.....)))..)))..-..(((((....)))))......))..)...))).(((-----(.(......).)))).))))))))))...-. ( -37.90) >consensus GUGUCCAUUUUGCAAUUUGCCGCCGGCGCGGUGAACGCAAGGCAAAAAUUGUUAAAAGACCAAAGGG______________________GGG_GAAGUGGCUU_AAAGUGGGCGGAA_A .((((((((((((.....)).(((...(((.....)))..))).............................................................))))))))))..... (-20.56 = -20.76 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:19 2006