Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,407,715 – 14,407,815 |
Length | 100 |
Max. P | 0.715802 |
Location | 14,407,715 – 14,407,815 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 90.61 |
Mean single sequence MFE | -24.60 |
Consensus MFE | -19.40 |
Energy contribution | -20.28 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.16 |
Mean z-score | -1.61 |
Structure conservation index | 0.79 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.715802 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14407715 100 + 22224390 GAUUGCGUACAUGUACUUAGUGUAAUUGGUUCACUUUGAGGCAACUCGAAUGCUUUCCAUUUGAGGCAAAUGUAUUUAAUUUUAUUUUCCCAGUGGAAAA----- (((((.((((((...(((((......(((..((.((((((....))))))))....))).)))))....)))))).)))))...((((((....))))))----- ( -22.70) >DroSec_CAF1 117676 100 + 1 GAUUGCCUACAUGUACUUAGUGUAAUUGGUUCACUUUUAGGCAACUCGAAUGUGUUCCAUUUGAGGCAAAUGUAUUUAAUUUUAUUUUCCCAGUGGAAAA----- ..((((((((((.......))))...(((..((((((.((....)).))).)))..)))....))))))...............((((((....))))))----- ( -23.50) >DroSim_CAF1 110632 99 + 1 GAUUGCCUACAUGUACUUAGUGUAAUUGGUUCACUUUCAGGCAACUCGAAUGUUUUCCAUUUGAGGCAAAUGUAUUUAAUUUUAUUUUCCCAGUGGAAA------ ..((((((((((.......))))...(((...((.(((((....)).))).))...)))....))))))................(((((....)))))------ ( -19.60) >DroEre_CAF1 102863 99 + 1 AAGUGCGUACAUGUACUUAGUGUAAUUGGUUGGCUUUGAGGCAACUCGAAUGCUUUCCAUCUGAGGCAGCUGUAUUUAAUUUUAUUUUGCCAGUGCAA------G (((((((....)))))))..((((..(((..(((((((((....)))))).)))..))).....(((((..(((........))).)))))..)))).------. ( -30.30) >DroYak_CAF1 118119 105 + 1 GAAUGCGUACAUGUACUUAGUGUAAUUGGUUCGCUUUGAGGCAACUCGAAUGUUUUCCAUUUGAGGCAAAUGUAUUUAAUUUUAUUUUCCCAGUGGAAAAGGGCG ((((...(((((.......)))))....))))((((((((....))))))(.(((((((((.(.((.(((((..........))))).)))))))))))).))). ( -26.90) >consensus GAUUGCGUACAUGUACUUAGUGUAAUUGGUUCACUUUGAGGCAACUCGAAUGUUUUCCAUUUGAGGCAAAUGUAUUUAAUUUUAUUUUCCCAGUGGAAAA_____ (((((.((((((...(((((......(((...((((((((....)))))).))...))).)))))....)))))).)))))....(((((....)))))...... (-19.40 = -20.28 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:17 2006