| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,406,941 – 14,407,044 |
| Length | 103 |
| Max. P | 0.841645 |
| Location | 14,406,941 – 14,407,044 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 89.19 |
| Mean single sequence MFE | -27.03 |
| Consensus MFE | -22.29 |
| Energy contribution | -23.07 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.47 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.841645 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14406941 103 - 22224390 AACAACUGUAGCAAAUGCAGCAGUUAGGGCAACAGUAACAACAAUAAAACUGGCACUUUCAGCUGCCACUUGCAGCAGAUUCCACACUCGAAAG------------CCACCCGAA ...((((((.((....)).)))))).(((...((((............))))...(((((.(((((.....))))).((........)))))))------------...)))... ( -27.30) >DroSec_CAF1 116944 102 - 1 AGCAACUGUAGCAAAUGCAGCAGUUAGGGCAACAGUAACAACAAUAAAACUGGCACUUGCA-CUGCCACUUGCAGCAGAUUCCACACUCGAAAG------------CCACCCAAA .((..((((.((((.((..(((((((((((..((((............)))))).)))).)-)))))).)))).)))).(((.......))).)------------)........ ( -23.10) >DroYak_CAF1 117386 115 - 1 AGCAACUGGAGCAAAUGCAGCAGUUAGGGCAACAGUAACAACAAUAAAACUGGCACUUUCAGCUGCCACUUGCAGCAGAUUCCACACUCGAAGGCAGCCCGAAAAGCCACCCGAA .(((((((..((....))..))))).((((..((((............))))...(((((.(((((.....))))).((........)))))))..)))).....))........ ( -30.70) >consensus AGCAACUGUAGCAAAUGCAGCAGUUAGGGCAACAGUAACAACAAUAAAACUGGCACUUUCAGCUGCCACUUGCAGCAGAUUCCACACUCGAAAG____________CCACCCGAA ...((((((.((....)).)))))).(((...((((............))))...(((((.(((((.....))))).((........)))))))...............)))... (-22.29 = -23.07 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:16 2006