Locus 5573

Sequence ID X_DroMel_CAF1
Location 14,403,741 – 14,403,840
Length 99
Max. P 0.975042
window9043

overview

Window 3

Location 14,403,741 – 14,403,840
Length 99
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 79.27
Mean single sequence MFE -31.12
Consensus MFE -19.40
Energy contribution -20.26
Covariance contribution 0.86
Combinations/Pair 1.04
Mean z-score -2.94
Structure conservation index 0.62
SVM decision value 1.74
SVM RNA-class probability 0.975042
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14403741 99 - 22224390
UGAGCAAUUAGUUUUGAUGCGUUGCAUUUAAAAUUAAUUGCAG---------UGGCGUUAAUUGGCUGCAA-------UCUGCCACGCCCCGCACCCCACGGCCAACGCCC-C--CAA
...(((((((((((((((((...))).))))))))))))))..---------.(((((....((((((...-------..(((........))).....))))))))))).-.--... ( -33.10)
>DroSec_CAF1 113764 96 - 1
UGAGCAAUUAGUUUUGAUGCGUUGCAUUUAAAAUUAAUUGCAG---------UGGCGUUAAUUGGCUGCAA-------UCUGCCACGCCC---AACCCACGGCCAACGCCC-C--CAA
...(((((((((((((((((...))).))))))))))))))..---------.((((((...((((.....-------...)))).(((.---.......))).)))))).-.--... ( -33.10)
>DroEre_CAF1 99152 104 - 1
UGAGCAAUUAGUUUUGAUGCGUUGCAUUUAAAAUUAAUUGCAC---------UGGCGUUAAUUGGCUGCAAUCUGCAAUCUGCCACGCCC---ACCCCAGCCGGACAGCCGGA--CAG
...(((((((((((((((((...))).)))))))))))))).(---------(((.((....(((((((.....)))....)))).....---)).))))((((....)))).--... ( -33.90)
>DroYak_CAF1 113408 95 - 1
UGAGCAAUUAGUUUUGAUGCGUUGCAUUUAAAAUUAAUUGCAG---------UGGCGUUAAUUGGCUGCAA-------UCUGCCACGCCC---ACCCCACCAUCACCGCCC----CAU
((((((((((((((((((((...))).)))))))))))))).(---------((((((.....(((.....-------...)))))).))---)).......)))......----... ( -27.60)
>DroAna_CAF1 179752 92 - 1
UGAGCAAUUAGUUUUGAUGCGUUGCGUUUAAAAUUAAUUGCAG---------UAGCGUUAAUUGGCUGCAA-------UCUGCCACUCCC-----CCCAGGAU-ACUUCCGG----UU
...(((((((((((((((((...))).)))))))))))))).(---------((((........)))))..-------............-----.((.(((.-...)))))----.. ( -26.20)
>DroPer_CAF1 125409 105 - 1
UGAGCAAUUAGUUUUGAUGCGUUGCAUUUAAAAUUAAUUGCAGCAGCAGCAGCAGCGUUAAUUGGCUGCAA-------UCCUCCCCACCU---AC--UGCUGCCAACGAUC-CGCCAA
...(((((((((((((((((...))).)))))))))))))).(((((((..(((((........)))))..-------............---.)--))))))........-...... ( -32.83)
>consensus
UGAGCAAUUAGUUUUGAUGCGUUGCAUUUAAAAUUAAUUGCAG_________UGGCGUUAAUUGGCUGCAA_______UCUGCCACGCCC___ACCCCACGGCCAACGCCC_C__CAA
...(((((((((((((((((...))).))))))))))))))............(((((.....(((...............))))))))............................. (-19.40 = -20.26 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:13 2006