Locus 5571

Sequence ID X_DroMel_CAF1
Location 14,399,001 – 14,399,113
Length 112
Max. P 0.841607
window9041

overview

Window 1

Location 14,399,001 – 14,399,113
Length 112
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.59
Mean single sequence MFE -18.78
Consensus MFE -15.55
Energy contribution -15.55
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.23
Structure conservation index 0.83
SVM decision value 0.75
SVM RNA-class probability 0.841607
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14399001 112 - 22224390
------UCG--UCUCUUUUAUUUUGUGCAUAAUUGAAAUUUAUGCUUAAAUACAUUCAACGAGCUGCUGAGCGGCUUAUGAUCCUUCCUCCAUCGUAUCCUUCGCAGCCCUCGCAUCCUU
------(((--(......(((((...((((((.......))))))..)))))......))))(((((.(((.((..((((((.........)))))).))))))))))............ ( -24.20)
>DroPse_CAF1 117857 101 - 1
GUGUGUCUGUCUCUCUUUUAUUUGGUGCAUAAUUGAAAUUUAUGCUUAAAUACAUUCAACGAGCUGCUGAGCGGCUUAUGAUCCUA---CGUU----UCCUU------------AUUUUU
(((..((...........(((((((.((((((.......)))))))))))))........(((((((...)))))))..))..).)---)...----.....------------...... ( -18.40)
>DroSec_CAF1 107377 109 - 1
------CCG--UCUCUUUUAUUUUGUGCAUAAUUGAAAUUUAUGCUUAAAUACAUUCAACGAGCUGCUGAGCGGCUUAUGAUCCUU---CCAUCCUAUCCUUUGCAGCCCUCGCAUCCUU
------.((--(......(((((...((((((.......))))))..)))))......))).(((((.(((.((...(((......---.)))....))))).)))))............ ( -18.50)
>DroEre_CAF1 95581 90 - 1
------CCG--UCUCCUUUAUUUUGUGCAUAAUUGAAAUUUAUGCUUAAAUACAUUCAACGAGCUGCUGAGCGGCUUAUGAUCCUU---C-------------------CUCGCAUCCUU
------...--.......(((((...((((((.......))))))..)))))...(((..(((((((...))))))).))).....---.-------------------........... ( -15.90)
>DroWil_CAF1 109044 87 - 1
------GUG--AUGCUUUUAUUUGGUGCAUAAUUGAAAUUUAUGCUUAAAUACAUUCAACGAGCUGCUGAGCGGCUUAUGAUCCUU---CGUU----UU------------------GGG
------...--.......(((((((.((((((.......)))))))))))))...(((..(((((((...))))))).))).((..---....----..------------------)). ( -18.40)
>DroAna_CAF1 174595 97 - 1
------CUG--UCUCUUUUAUUUGGUGCAUAAUUGAAAUUUAUGCUUAAAUACAUUCAACGAGCUGCUGAGCGGCUUAUGAUCCUU---CCAUCACUUCUUUU------------UCCUU
------...--.......(((((((.((((((.......)))))))))))))...(((..(((((((...))))))).))).....---..............------------..... ( -17.30)
>consensus
______CCG__UCUCUUUUAUUUGGUGCAUAAUUGAAAUUUAUGCUUAAAUACAUUCAACGAGCUGCUGAGCGGCUUAUGAUCCUU___CCAU____UCCUU____________AUCCUU
..................(((((...((((((.......))))))..)))))...(((..(((((((...))))))).)))....................................... (-15.55 = -15.55 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:11 2006