Locus 5570

Sequence ID X_DroMel_CAF1
Location 14,394,047 – 14,394,141
Length 94
Max. P 0.861350
window9040

overview

Window 0

Location 14,394,047 – 14,394,141
Length 94
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 87.34
Mean single sequence MFE -37.48
Consensus MFE -31.84
Energy contribution -32.66
Covariance contribution 0.82
Combinations/Pair 1.11
Mean z-score -1.72
Structure conservation index 0.85
SVM decision value 0.83
SVM RNA-class probability 0.861350
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14394047 94 - 22224390
UUACGUAACCGUUACGUAAGCAGCCGCCGGGAACGGCAGGCGAGCUCCCGAUGUUGUUACCUGGGCGUCAAGCCAGAAGGAAAGGCGCCUGGGG
(((((((.....)))))))((.(((((((....)))).)))..))..............((..((((((...((....))...))))))..)). ( -42.50)
>DroSec_CAF1 102409 94 - 1
UUACGUAACCGUUACGUAAGCAGCCGCCGGGAACGGCAGUCGAGCUCCCAAUGUUGUUACCUGGGCGUCAAGCCAGAAGGGAAGGCGCCUGGGG
.((((((.....))))))((((((.((((....))))((.....))......)))))).((..((((((...((.....))..))))))..)). ( -37.90)
>DroSim_CAF1 97405 94 - 1
UUACGUAACCGUUACGUAAGCAGCCGCCGGGAACGGCAGUCGAGCUCCCAAUGUUGUUACCUGGGCGUCAAGCCAGAAGGGAAGGCGCCUGGGG
.((((((.....))))))((((((.((((....))))((.....))......)))))).((..((((((...((.....))..))))))..)). ( -37.90)
>DroEre_CAF1 91164 75 - 1
UUACGUAACCGUUACGCAAGCAGCCGCCGGGAAC------------------GUUGCUACCUGGGCGUCGGGCCAGAAG-GAAGGCGCCUGGGG
..((((..(((....((.....))...)))..))------------------)).....((..((((((...((....)-)..))))))..)). ( -30.30)
>DroYak_CAF1 104197 94 - 1
UUACGUAACCGUUACGUAAGCAGCCGCCGGGAACGGCAGUCGAGCUCCCGAUGUUGUUACUUGGGUGUCAAGCCGGAAGGGAAUGCGCCUGGGG
.((((((.....))))))((((((.((((....)))).((((......)))))))))).((..(((((....((....))....)))))..)). ( -38.80)
>consensus
UUACGUAACCGUUACGUAAGCAGCCGCCGGGAACGGCAGUCGAGCUCCCAAUGUUGUUACCUGGGCGUCAAGCCAGAAGGGAAGGCGCCUGGGG
.((((((.....))))))((((((.((((....))))((.....))......)))))).((..((((((...((....))...))))))..)). (-31.84 = -32.66 +   0.82)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:10 2006