Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,607,807 – 1,607,904 |
Length | 97 |
Max. P | 0.923860 |
Location | 1,607,807 – 1,607,904 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 75.08 |
Mean single sequence MFE | -26.20 |
Consensus MFE | -12.33 |
Energy contribution | -12.25 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.25 |
Mean z-score | -2.22 |
Structure conservation index | 0.47 |
SVM decision value | 1.16 |
SVM RNA-class probability | 0.923860 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1607807 97 - 22224390 GAAG-GAGGGCGGAGUACUUUUG------GUCGGAGAUGAGGUGACCAGAAGAGAAUAGGUUGUUAAA---GCAUUUACGGCCGAUCGGUCAG----UAGACAUGUGGAAA ....-...(((.((...((((((------((((.........))))))))))......((((((....---......))))))..)).)))..----.............. ( -23.40) >DroSec_CAF1 3552 97 - 1 GAAG-GAGGGCGGAGUACUUUUG------GUCGGAGAUGAGGUGACCAGAAGAGAAUAGGUCGUAAAA---GCAUUUAUGGCCGAUCGGUCAG----UAGACAUGUGGAAA ....-...(((.((...((((((------((((.........))))))))))......(((((((((.---...)))))))))..)).)))..----.............. ( -27.10) >DroSim_CAF1 19551 97 - 1 GAAG-GAGGGCGGAGUACUUUUG------GUCGGAGAUGAGGUGACCAGAAGAGAAUAGGUCGUAAAA---GCAUUUAUGGCCGAUCGGUCAG----UAGACAUGUGGAAA ....-...(((.((...((((((------((((.........))))))))))......(((((((((.---...)))))))))..)).)))..----.............. ( -27.10) >DroEre_CAF1 4595 88 - 1 --AUUUUGGUC-GAGUU-CA------------CGAGAUGAGGUGACCAGAAGAGAAUAGGUCGUUAAA---GCAUUUACGGCCGAUCGGUGGG----UGGGCAUGUGGAAA --.((((((((-(..((-((------------.....)))).))))))))).................---...(((((((((.(((....))----).))).)))))).. ( -24.00) >DroYak_CAF1 4910 95 - 1 GCAA-GAGGUCGGAGUUCCA------------CGAGAUGAGGUGACCAUAAGAGAAUAGGUCGUAAAA---ACAUUUACGGCCGAUCGGUCGGUCAGUAGACAUGUGCAAA (((.-...(((((....)).------------........(.(((((....((.....(((((((((.---...)))))))))..))....))))).).)))...)))... ( -29.30) >DroAna_CAF1 5368 97 - 1 ----------CAGAGUACUGGGAAGCCGCACCACAGAUGAGGUGACCAGAAGACCUGAGAUCGUAAAAUAUAUAUUUACGGGCAAUUGGUCGG----UACACAUGUGGAAA ----------.........((....))...(((((..((.(.(((((((..(.((((((((.(((.....))))))).)))))..))))))).----).))..)))))... ( -26.30) >consensus GAAG_GAGGGCGGAGUACUUUUG______GUCGGAGAUGAGGUGACCAGAAGAGAAUAGGUCGUAAAA___GCAUUUACGGCCGAUCGGUCAG____UAGACAUGUGGAAA ..........................................(((((....((.....(((((((((.......)))))))))..)))))))................... (-12.33 = -12.25 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:40 2006