| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,384,866 – 14,384,960 |
| Length | 94 |
| Max. P | 0.813542 |
| Location | 14,384,866 – 14,384,960 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 87.78 |
| Mean single sequence MFE | -23.25 |
| Consensus MFE | -17.73 |
| Energy contribution | -18.47 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.813542 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14384866 94 + 22224390 GUAAAUAUGCAUUCUCAGAAAAACGGGAAAAGCAACAGCUAGCUUUUGAGUUUCUGGUUAACUUGGAAAGGUGGCAAAAGUUGUGAUG---GUGUUA ........((((..(((.((.(((.(((((..(((.((....)).)))..))))).))).((((....))))........)).)))..---)))).. ( -21.10) >DroSec_CAF1 100894 94 + 1 GUAAAUAUGCAUUCUCGGAAAAACGGGAAAAGCAACAGCUAGCUUUUCAGUUUCUGGUUAACUUGGAAAGGUGGCAAAAGUUGUGAUG---GUGAUA ...........((((((......))))))..(((((.((((.((((((((((.......))).))))))).))))....)))))....---...... ( -24.40) >DroSim_CAF1 95780 94 + 1 GUAAAUAUGCAUUCUCGGAAAAACGGGAAAAGCAACAGCUAGCUUUUGAGUUUCUGGUUAACUUGGAAAGGUGGCAAAAGUUGUGAUG---GUGAUA ...........((((((......))))))..(((((.((((.((((..((((.......))))..).))).))))....)))))....---...... ( -22.80) >DroYak_CAF1 102619 96 + 1 GUAAAUAUGCAUUUUCAGGGCAACGAGAAAAGCAACAGCUAGCUUCAGAGUUGCUGGUUAACU-AAAAAGGUAGCCAAAGUUGCAAGGCAAGUGAUU .......(((.(((((..(....)..)))))((((((((.((((....)))))))(((((.((-....)).)))))...)))))...)))....... ( -24.70) >consensus GUAAAUAUGCAUUCUCAGAAAAACGGGAAAAGCAACAGCUAGCUUUUGAGUUUCUGGUUAACUUGGAAAGGUGGCAAAAGUUGUGAUG___GUGAUA ........((.((((((......))))))..(((((.((((.((((((((((.......))))).))))).))))....))))).......)).... (-17.73 = -18.47 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:06 2006