Locus 5564

Sequence ID X_DroMel_CAF1
Location 14,381,940 – 14,382,048
Length 108
Max. P 0.545191
window9029

overview

Window 9

Location 14,381,940 – 14,382,048
Length 108
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 88.52
Mean single sequence MFE -22.43
Consensus MFE -16.21
Energy contribution -17.54
Covariance contribution 1.33
Combinations/Pair 1.00
Mean z-score -2.19
Structure conservation index 0.72
SVM decision value 0.02
SVM RNA-class probability 0.545191
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14381940 108 + 22224390
UCCCGACUUACUAUUAGCACACUUCGAAUAUCUGUACUCAGUUAAGUUUGUUUUGGAACUAU----AUAUCUAAGCACAACCUUGUACAGAUUGUCAUUUAGUUUGUCUUUG--------
....(((..((((...(((..........((((((((......(((.((((((((((.....----...)))))).)))).))))))))))))))....))))..)))....-------- ( -21.50)
>DroSec_CAF1 97988 117 + 1
UCCCGACUUACU---AGCACACUUCGUAUAUCUGUACUCAGUUAAGUUUGUUUUGGAACUAUCUUUUUAUCUAAGCGCAACUUUGUACAGAUUUUCAUUUAGUUUGUCUUUGCUACUUUG
....(((..(((---((.((.....))..((((((((..((((..(((((...(((((......)))))..)))))..))))..))))))))......)))))..)))............ ( -22.90)
>DroSim_CAF1 91822 117 + 1
UCCCGACUUACU---AGCACACUUCGUAUAUCUGUACUCAGUUAAGUUUGUUUUGGAACUAUCUUUUUAUCUAAGCGCAACUUUGUACAGAUUUUCAUUUAGUUUGUCUUUGCUUCUUUG
....(((..(((---((.((.....))..((((((((..((((..(((((...(((((......)))))..)))))..))))..))))))))......)))))..)))............ ( -22.90)
>consensus
UCCCGACUUACU___AGCACACUUCGUAUAUCUGUACUCAGUUAAGUUUGUUUUGGAACUAUCUUUUUAUCUAAGCGCAACUUUGUACAGAUUUUCAUUUAGUUUGUCUUUGCU_CUUUG
....(((..(((.................((((((((..((((..(((((...(((((......)))))..)))))..))))..))))))))........)))..)))............ (-16.21 = -17.54 +   1.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:00 2006