Locus 5562

Sequence ID X_DroMel_CAF1
Location 14,378,910 – 14,379,002
Length 92
Max. P 0.968684
window9025

overview

Window 5

Location 14,378,910 – 14,379,002
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 96.52
Mean single sequence MFE -26.80
Consensus MFE -24.50
Energy contribution -24.90
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.64
Structure conservation index 0.91
SVM decision value 1.63
SVM RNA-class probability 0.968684
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14378910 92 + 22224390
CCUGGCAAGCUGAAAGUUGAAGUGUCGCAAAAGGGACAGUGGGAGGACUUUAAACAUGCCACAUGGCACAGCGGGUGCAAAAACGUGCCACA
..(((((.((((((((((..(.((((.(....).)))).).....)))))).....((((....))))))))..((......)).))))).. ( -27.30)
>DroSec_CAF1 95011 92 + 1
CCUGGAAAGCUGAAAGUUAAAGUGUCGCAAAAGGGACAGUGGGAGGACUUUAAACAUGCCACAUGGCACAGCGGGUGCAAAAACGUGCCACA
........((((((((((..(.((((.(....).)))).).....)))))).....((((....)))))))).((..(......)..))... ( -27.60)
>DroSim_CAF1 88795 92 + 1
CCUGGAAAGCUGAAAGUUGAAGUGUCGCAAAAGGGACAGUGGGAGGACUUUAAACAUGCCACAUGGCACAGCGGGUGCAAAAACGUGCCACA
........((((((((((..(.((((.(....).)))).).....)))))).....((((....)))))))).((..(......)..))... ( -26.50)
>DroEre_CAF1 85723 92 + 1
CCUGAAAAGCUGCAAGUUGAAGUGUCGCCAAAGGGACAGUGGGCGGACUUUAAACACGCCACAUGGCACAGCGGGUGCAAAAACGUGCCACA
........((((....(((((((.(((((............))))))))))))....(((....))).)))).((..(......)..))... ( -28.40)
>DroYak_CAF1 97044 92 + 1
CCUGAAAAGCUGCAAGUUGAAGUGUCGCAAAAGGGACAGUGGGAGGACUUUAAACAUGCCACAUGGCACAGCGGGUGCAAAAACGUGCCACA
........((((.(((((..(.((((.(....).)))).).....)))))......((((....)))))))).((..(......)..))... ( -24.20)
>consensus
CCUGGAAAGCUGAAAGUUGAAGUGUCGCAAAAGGGACAGUGGGAGGACUUUAAACAUGCCACAUGGCACAGCGGGUGCAAAAACGUGCCACA
........((((((((((..(.((((.(....).)))).).....))))))......(((....))).)))).((..(......)..))... (-24.50 = -24.90 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:57 2006