Locus 5560

Sequence ID X_DroMel_CAF1
Location 14,375,486 – 14,375,598
Length 112
Max. P 0.609498
window9022

overview

Window 2

Location 14,375,486 – 14,375,598
Length 112
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.51
Mean single sequence MFE -26.20
Consensus MFE -17.41
Energy contribution -17.30
Covariance contribution -0.11
Combinations/Pair 1.12
Mean z-score -1.59
Structure conservation index 0.66
SVM decision value 0.15
SVM RNA-class probability 0.609498
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14375486 112 + 22224390
UUUUAUUUCGUUUCUAAUUUGCGCGCUGCGCCAGCAAAUUGAAACAUUUCGUGCAACGGAAACGAAGUGCAAUGACUCCAU----CGGUCUGUCGGGGAUCCCCAUUCC-UUCAC-CA--
...((((((((((((...((((((((((...)))).....(((....))))))))).))))))))))))....(((.((..----.))...)))(((....))).....-.....-..-- ( -33.10)
>DroPse_CAF1 99077 107 + 1
UUUUAUUUCGCUUCUAAUUUGCGCGCUGCCCCAGCAAAUUGAAACAUUUUGUGCAACGGAAACGAAGUGCAAUGACUUCCC----CAUUCG---------CCUCAUUCCCCCCAUUCCAC
..(((((.((((((....((((((((((...))))((((......)))).)))))).(....))))))).)))))......----......---------.................... ( -20.40)
>DroSec_CAF1 91655 112 + 1
UUUUAUUUCGUUUCUAAUUUGCGCGCUGCGCCAGCAAAUUGAAACAUUUCGUGCAAAGGAAACGAAGUGCAAUGACUCCAU----CGGUCUGUCGGGGAUCCCCAUUCC-UUCAC-CG--
...((((((((((((..(((((((((((...)))).....(((....))))))))))))))))))))))....(((.((..----.))...)))(((....))).....-.....-..-- ( -34.30)
>DroEre_CAF1 82427 113 + 1
UUUUAUUUCGAUUCUAAUUUGCGCGGUGCGCCAGCAAAUUGAAACAUUUCGUGCAGCGGAAACGAAGUGCAAUGACUCCAU----CGGUCUGUCGGGGAUCCCCACUCC-CACUC-CCA-
........((((..((((((((..((....)).)))))))).........(..(..((....))..)..)...((((....----.)))).))))((((.......)))-)....-...- ( -28.60)
>DroYak_CAF1 93630 113 + 1
UUUUAUUUCGUUUUUAAUUUGCGCGCUGCGCCAGCAAAUUGAAACAUUUAGUGCAACGGAAACGAAGUGCAAUGACUCCAAUCCCCACACUAUC----AUUCCUACACC-ACCAC-CAC-
.......((((((((((((((((((...)))..)))))))))).......(..(..((....))..)..))))))...................----...........-.....-...- ( -20.40)
>DroPer_CAF1 100893 106 + 1
UUUUAUUUCGCUUCUAAUUUGCGCGCUGCCCCAGCAAAUUGAAACAUUUUGUGCAACGGAAACGAAGUGCAAUGACUUCCC----CAUUCG---------CCUCAUUCC-CCCAUUCCAC
..(((((.((((((....((((((((((...))))((((......)))).)))))).(....))))))).)))))......----......---------.........-.......... ( -20.40)
>consensus
UUUUAUUUCGUUUCUAAUUUGCGCGCUGCGCCAGCAAAUUGAAACAUUUCGUGCAACGGAAACGAAGUGCAAUGACUCCAU____CAGUCUGUC____AUCCCCAUUCC_CCCAC_CCA_
...(((((((.((((...((((((((((...)))).....(((....))))))))).)))).)))))))................................................... (-17.41 = -17.30 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:54 2006