Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,606,748 – 1,606,868 |
Length | 120 |
Max. P | 0.774340 |
Location | 1,606,748 – 1,606,868 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.96 |
Mean single sequence MFE | -39.33 |
Consensus MFE | -28.79 |
Energy contribution | -29.57 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.03 |
Mean z-score | -2.09 |
Structure conservation index | 0.73 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.648207 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1606748 120 + 22224390 AUUUGGACAACUUUGUGAGUGAUUUCCAAAGGAGUCGAGCCCUCGUUCGCAAAUCCAUAGUGCUAAGACAACGGUGGAUGCCAUGGGUUUGCACGGUAAUCGCGGGGAGCUGUCCAUGAU ...((((((.((((....((((((.((....(((.(((....))))))((((((((((.((......))...(((....)))))))))))))..)).))))))..)))).)))))).... ( -41.20) >DroSec_CAF1 2508 102 + 1 AUUUGGACACCUUUGUGAGUGAUUUCCAAAGGAGUCGAGCCCUCGUUAGCAAAUCCAUGGCGCUAAGACACCGGUGGAUGCCAUGG------------------GGGAGCUGUCCAUGAU ...((((((((((((.(((....)))))))))....(..(((((((..(((..(((((((.(......).)).)))))))).))))------------------)))..))))))).... ( -37.20) >DroSim_CAF1 18509 102 + 1 AUUUGGACACCUUUGUGAGUGAUUUCCAAAGGAGUCGAGCCCUCGUUCGCAAAUCCACGGCGCUAAGACACCGGUGGAUGCCAUGG------------------GGGAGCUGUCCAUGAU ...((((((((((((.(((....)))))))))....(..(((((((..(((..(((((((.(......).)).)))))))).))))------------------)))..))))))).... ( -39.60) >consensus AUUUGGACACCUUUGUGAGUGAUUUCCAAAGGAGUCGAGCCCUCGUUCGCAAAUCCAUGGCGCUAAGACACCGGUGGAUGCCAUGG__________________GGGAGCUGUCCAUGAU ...((((((((((((.(((....)))))))))....(..(((..(....)....(((((((((((.(....)..))).))))))))..................)))..))))))).... (-28.79 = -29.57 + 0.78)
Location | 1,606,748 – 1,606,868 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.96 |
Mean single sequence MFE | -34.87 |
Consensus MFE | -26.56 |
Energy contribution | -26.57 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.10 |
Mean z-score | -2.26 |
Structure conservation index | 0.76 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.774340 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1606748 120 - 22224390 AUCAUGGACAGCUCCCCGCGAUUACCGUGCAAACCCAUGGCAUCCACCGUUGUCUUAGCACUAUGGAUUUGCGAACGAGGGCUCGACUCCUUUGGAAAUCACUCACAAAGUUGUCCAAAU ....(((((((((.............((((.((..(((((......))).))..)).))))....(((((.((((.(((.......))).)))).)))))........)))))))))... ( -33.20) >DroSec_CAF1 2508 102 - 1 AUCAUGGACAGCUCCC------------------CCAUGGCAUCCACCGGUGUCUUAGCGCCAUGGAUUUGCUAACGAGGGCUCGACUCCUUUGGAAAUCACUCACAAAGGUGUCCAAAU ....((((((((((.(------------------...(((((((((..(((((....))))).))))..)))))..).))))......((((((((......)).))))))))))))... ( -35.10) >DroSim_CAF1 18509 102 - 1 AUCAUGGACAGCUCCC------------------CCAUGGCAUCCACCGGUGUCUUAGCGCCGUGGAUUUGCGAACGAGGGCUCGACUCCUUUGGAAAUCACUCACAAAGGUGUCCAAAU ....((((((((((.(------------------...(.((((((((.(((((....))))))))))..))).)..).))))......((((((((......)).))))))))))))... ( -36.30) >consensus AUCAUGGACAGCUCCC__________________CCAUGGCAUCCACCGGUGUCUUAGCGCCAUGGAUUUGCGAACGAGGGCUCGACUCCUUUGGAAAUCACUCACAAAGGUGUCCAAAU ....((((((.((......................(((((......))(((((....))))))))(((((.((((.(((.......))).)))).)))))........)).))))))... (-26.56 = -26.57 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:39 2006